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| MEGENA-package | co-expression network analysis |
| calculate.correlation | correlation calculation |
| calculate.PFN | PFN calculation |
| datExpr | Toy example data |
| do.MEGENA | MEGENA clustering + MHA |
| get.hub.summary | summarize hub information. |
| get.union.cut | Scale-thresholding of multiscale modules. |
| MEGENA | co-expression network analysis |
| MEGENA.ModuleSummary | MEGENA module summary |
| output.geneSet.file | output gene signatures into .gmt file format |
| planaritytest | Boyer-Myvold Planarity test of a network |
| read.geneSet | .gmt file reader function |
| Sample_Expression.RData | Toy example data |
| set.parallel.backend | register multiple cores for parallelization |