Network-Based Gene Set Analysis

Documentation for package ‘netgsa’ version 3.0

netgsa-package	Network-Based Gene Set Analysis
bic.netEst.undir	Bayesian information criterion to select the tuning parameters for 'netEst.undir'
edgelist	An example edge list
edgelist2adj	Construct an adjacency matrix from an edge list
netEst.dir	Constrained estimation of directed networks
netEst.undir	Constrained estimation of undirected networks
NetGSA	Network-based Gene Set Analysis
netgsaex2	Toy example for using 'NetGSA' on a two-class test with undirected networks
netgsaex3	Toy example for using 'NetGSA' on a three-class test with undirected networks
netgsaexDAG	Toy example for using 'NetGSA' on a two-class test with directed acyclic graphs
nonedgelist	An example for not-an-edge list