| AnalysisClass-class | An S4 class representing analysis data |
| BaseClass-class | An abstract S4 class representing contructed features |
| computeValue | generic function for computing constructed feature vectors |
| constructfeature | constructor function for adding constructed features to the system |
| ControlClass-class | An S4 class representing setups to be executed |
| DataClass-class | An S4 class representing data objects |
| defaultParameters | defaultParameters |
| initializecontrolclassobject | constructor function for intializing a ControlClass object |
| initializedataobject | constructor function for initializing a DataClass object |
| initializeparameterclassobject | constructor function for intializing a ParameterClass objects |
| initializesetupclassobject | constructor function for initializing a SetUpClass object |
| ParameterClass-class | An S4 class representing selected constructed features |
| plotCMDS | generic function for plotting classical multidimensional scaling |
| plotCMDS-method | generic function for plotting classical multidimensional scaling |
| plotDENSITY | generic function for plotting density estimates of constructed features |
| plotDENSITY-method | generic function for plotting density estimates of constructed features |
| plotHEATMAP | generic function for plotting heatmap |
| plotHEATMAP-method | generic function for plotting heatmap |
| plotLOFSUM | generic function for plotting lof sum of constructed features |
| plotLOFSUM-method | generic function for plotting lof sum of constructed features |
| plotOUTLIERS | generic function for plotting density of LOF scores |
| plotOUTLIERS-method | generic function for plotting density of LOF scores |
| plotVARCLUST | generic function for plotting variable clusters |
| plotVARCLUST-method | generic function for plotting variable clusters |
| plotVARIMP | generic function for plotting variable importance |
| plotVARIMP-method | generic function for plotting variable importance |
| preproviz | the MAIN execution function |
| ReportClass-class | An S4 class representing visualizations |
| RunClass-class | An S4 class representing preproviz output (data and visualizations) |
| SetUpClass-class | An S4 class representing setups |