Treatment Effect eXplorer for Microbial Ecology eXperiments (using Sequence Counts)

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Documentation for package ‘texmexseq’ version 0.3

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texmexseq-package Treatment Effect eXplorer for Microbial Ecology eXperiments
dpoilog probability density function for the Poisson lognormal distribution
f.transform.sample transform from raw counts to Poisson-lognormal-based metrics
f.transform.table transform from raw counts to Poisson-lognormal-based metrics
poilogMLE maximum likelihood estimation for the Poisson lognormal
ppplot PP plot for Poisson lognormal distribution
quad.plot Create and plot "quads" of samples
quad.table Create and plot "quads" of samples
rpoilog probability density function for the Poisson lognormal distribution
texmex.fit wrapper for fitting the Poisson lognormal
texmexseq Treatment Effect eXplorer for Microbial Ecology eXperiments
z.transform.sample transform from raw counts to Poisson-lognormal-based metrics
z.transform.table transform from raw counts to Poisson-lognormal-based metrics