| tigger-package | tigger |
| cleanSeqs | Clean up nucleotide sequences |
| findNovelAlleles | Find novel alleles from repertoire sequencing data |
| findUnmutatedCalls | Determine which calls represent an unmutated allele |
| genotype | Example of an Inferred Genotype |
| genotypeFasta | Return the nucleotide sequences of a genotype |
| germline_ighv | Human IGHV germlines |
| getMutatedPositions | Find the location of mutations in a sequence |
| getMutCount | Determine the mutation counts from allele calls |
| getPopularMutationCount | Find Frequent Sequences' Mutation Counts |
| inferGenotype | Infer a subject-specific genotype |
| insertPolymorphisms | Insert polymorphisms into a nucleotide sequence |
| novel_df | Example of Analyzed Rep-Seq data |
| plotGenotype | Show a colorful representation of a genotype |
| plotNovel | Visualize evidence of novel V alleles |
| readIgFasta | Read immunoglobulin sequences |
| reassignAlleles | Correct allele calls based on a personalized genotype |
| sample_db | Example human Rep-Seq data |
| selectNovel | Select rows containing novel alleles |
| sortAlleles | Sort allele names |
| tigger | tigger |
| updateAlleleNames | Update IGHV allele names |
| writeFasta | Write to a fasta file |