Principal Coordinates of Phylogenetic Structure

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Documentation for package ‘PCPS’ version 1.0.6

Help Pages

define.clade Define clade
matrix.p.sig Association between phylogeny-weighted species composition and environmental predictors
pcoa.sig Significant dimensions in principal coordinate analysis
pcpc.curve.calc Curve of phylogenetic signal at metacommunity level
pcps Principal Coordinates of Phylogenetic Structure
pcps.curve Curve of phylogenetic signal at metacommunity level
pcps.sig Association between phylogeny-weighted species composition and environmental predictors
plot.pcps Principal Coordinates of Phylogenetic Structure
plot.pcpscurve Curve of phylogenetic signal at metacommunity level
print.pcoasig Significant dimensions in principal coordinate analysis
print.pcps Principal Coordinates of Phylogenetic Structure
print.pcpscurve Curve of phylogenetic signal at metacommunity level
print.summarypcoasig Significant dimensions in principal coordinate analysis
print.summarypcps Principal Coordinates of Phylogenetic Structure
scores.pcps Principal Coordinates of Phylogenetic Structure
self.belonging Degree of self belonging of species
summary.pcoasig Significant dimensions in principal coordinate analysis
summary.pcps Principal Coordinates of Phylogenetic Structure
summary.pcpscurve Curve of phylogenetic signal at metacommunity level
wcmdscale.org Internal function for organize the results of wcmdscale function