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| TipDatingBeast-package | Tip dating of phylogenetic trees with BEAST |
| Flu_BEAST_18 | Example BEAST 1 input file |
| Flu_BEAST_18.clusters.Flu.csv | Cluster structure example input file for the RandomCluster function |
| Flu_BEAST_232 | Example BEAST 2 input file |
| Flu_BEAST_232.clusters.Flu.csv | Cluster structure example input file for the RandomCluster function |
| LISTTAXA | List taxa names present in the BEAST input file |
| ListTaxa | List taxa names present in the BEAST input file |
| PLOTDRT | List taxa names present in the BEAST input file |
| PlotDRT | List taxa names present in the BEAST input file |
| PLOTLOOCV | List taxa names present in the BEAST input file |
| PlotLOOCV | List taxa names present in the BEAST input file |
| RANDOMCLUSTER | randomize dates among tips in the BEAST input file |
| RandomCluster | randomize dates among tips in the BEAST input file |
| RANDOMDATES | randomize dates among tips in the BEAST input file |
| RandomDates | randomize dates among tips in the BEAST input file |
| TAXAOUT | generates input files for leave-one-out analyses in BEAST |
| TaxaOut | generates input files for leave-one-out analyses in BEAST |
| TAXONOUT | single Taxon out input file for leave-one-out analysis in BEAST |
| TaxonOut | single Taxon out input file for leave-one-out analysis in BEAST |
| TipDatingBeast | Tip dating of phylogenetic trees with BEAST |