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A B C D E F G H I L M N P R S T U X misc
| aqp-package | Algorithms for Quantitative Pedology |
| addBracket | Add Depth Brackets |
| addDiagnosticBracket | Add Depth Brackets |
| addVolumeFraction | Symbolize Volume Fraction on a Soil Profile Collection Plot |
| aggregateColor | Summarize Soil Colors |
| aggregateSoilDepth | Probabalistic Estimation of Soil Depth |
| aqp | Algorithms for Quantitative Pedology |
| aqp.env | Algorithms for Quantitative Pedology |
| argillic.clay.increase.depth | Return upper boundary of argillic horizon |
| brierScore | Multinominal Brier score |
| ca630 | Soil Data from the Central Sierra Nevada Region of California |
| checkSPC | Test for a valid SoilProfileCollection |
| clod.hz.ids | Return the unique horizon IDs within a "depth-clod" |
| colorQuantiles | Soil Color Range via Quantiles |
| confusionIndex | Confusion Index |
| coordinates-method | SoilProfileCollection Class |
| coordinates<--method | SoilProfileCollection Class |
| crit.clay.argillic | Determines threshold (minimum) clay content for argillic upper bound |
| depths<- | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| depths<--method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| depth_units | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| depth_units-method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| depth_units<- | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| depth_units<--method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| diagnostic_hz | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| diagnostic_hz-method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| diagnostic_hz<- | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| diagnostic_hz<--method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| estimatePSCS | Estimate boundaries of the particle size control section (U.S Soil Taxonomy; 12th edition) |
| estimateSoilDepth | Estimate Soil Depth |
| evalGenHZ | Evaluate Generalized Horizon Labels |
| evalMissingData | Evaluate Missing Data |
| explainPlotSPC | Profile Plot |
| f.noise | Example Objective Function for Full-Pattern Matching |
| generalize.hz | Generalize Horizon Names |
| genhzTableToAdjMat | Horizon Transition Probabilities |
| genSlabLabels | Slab-Wise Aggregation of SoilProfileCollection Objects |
| get.increase.depths | Return the horizon top depths from a call to get.increase.matrix() |
| get.increase.matrix | compute pair-wise distances to determine where an attribute increases within a vertical distance specified |
| get.ml.hz | Determine ML Horizon Boundaries |
| get.slice | Slicing of SoilProfilecollection Objects |
| getArgillicBounds | getArgillicBounds |
| getClosestMunsellChip | Convert Munsell Notation to and from sRGB color coordinates |
| getMineralSoilSurfaceDepth | Determine thickness of horizons (continuous from surface) matching a pattern |
| getPlowLayerDepth | Determine thickness of horizons (continuous from surface) matching a pattern |
| getSoilDepthClass | Generate Soil Depth Class Matrix |
| getSurfaceHorizonDepth | Determine thickness of horizons (continuous from surface) matching a pattern |
| glom | Return a "ragged" group of horizons selected from SoilProfileCollection |
| groupedProfilePlot | Grouped Soil Profile Plot |
| guessGenHzLevels | Guess Appropriate Ordering for Generalized Horizon Labels |
| horizonDepths | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| horizonDepths-method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| horizonDepths<- | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| horizonDepths<--method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| horizonNames | SoilProfileCollection Class |
| horizonNames-method | SoilProfileCollection Class |
| horizonNames<- | SoilProfileCollection Class |
| horizonNames<--method | SoilProfileCollection Class |
| horizons | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| horizons-method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| horizons<- | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| horizons<--method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| hzDistinctnessCodeToOffset | Convert Horizon Distinctness Codes |
| hzID | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| hzID-method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| hzID<- | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| hzID<--method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| hzidname | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| hzidname-method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| hzidname<- | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| hzidname<--method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| hzTransitionProbabilities | Horizon Transition Probabilities |
| idname | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| idname-method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| length-method | SoilProfileCollection Class |
| make.segments | Lattice Panel Function for Soil Profiles |
| max-method | SoilProfileCollection Class |
| metadata | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| metadata-method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| metadata<- | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| metadata<--method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| min-method | SoilProfileCollection Class |
| missingDataGrid | Missing Data Grid |
| mostLikelyHzSequence | Horizon Transition Probabilities |
| munsell | Munsell to sRGB Lookup Table for Common Soil Colors |
| munsell2rgb | Convert Munsell Notation to and from sRGB color coordinates |
| names | SoilProfileCollection Class |
| names-method | SoilProfileCollection Class |
| nrow-method | SoilProfileCollection Class |
| panel.depth_function | Lattice Panel Function for Soil Profiles |
| parseMunsell | Convert Munsell Notation to and from sRGB color coordinates |
| pc | Numerical Soil Profile Comparison |
| pc.SPC | Numerical Soil Profile Comparison |
| plot | Profile Plot |
| plot-method | Profile Plot |
| plot.SoilProfileCollection | Profile Plot |
| plotColorQuantiles | Soil Color Range via Quantiles |
| plotMultipleSPC | Plot Multiple SoilProfileCollection Objects |
| plotSPC | Profile Plot |
| plot_distance_graph | Between Individual Distance Plot |
| prepanel.depth_function | Lattice Panel Function for Soil Profiles |
| previewColors | Preview Colors |
| profileApply | Apply a function to soil profiles within a SoilProfileCollection object. |
| profileApply-method | Apply a function to soil profiles within a SoilProfileCollection object. |
| profileGroupLabels | Soil Profile Group Labels |
| profile_compare | Numerical Soil Profile Comparison |
| profile_compare-method | Numerical Soil Profile Comparison |
| profile_id | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| profile_id-method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| profile_id<- | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| profile_id<--method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| proj4string-method | SoilProfileCollection Class |
| proj4string<--method | SoilProfileCollection Class |
| random_profile | Random Profile |
| rbind.SoilProfileCollection | SoilProfileCollection Class |
| rebuildSPC | Rebuild a SoilProfileCollection object |
| resample.twotheta | Resample an XRD Pattern |
| rgb2munsell | Convert Munsell Notation to and from sRGB color coordinates |
| rruff.sample | Sample XRD Patterns |
| shannonEntropy | Shannon Entropy |
| show-method | SoilProfileCollection Class |
| sim | Simulate Soil Profiles |
| site | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| site-method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| site<- | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| site<--method | Getters, Setters, and Utility Methods for SoilProfileCollection Objects |
| siteNames | SoilProfileCollection Class |
| siteNames-method | SoilProfileCollection Class |
| siteNames<- | SoilProfileCollection Class |
| siteNames<--method | SoilProfileCollection Class |
| slab | Slab-Wise Aggregation of SoilProfileCollection Objects |
| slab-method | Slab-Wise Aggregation of SoilProfileCollection Objects |
| slab2 | Slab-Wise Aggregation of SoilProfileCollection Objects |
| slice | Slicing of SoilProfilecollection Objects |
| slice-method | Slicing of SoilProfilecollection Objects |
| slice.fast | Slicing of SoilProfilecollection Objects |
| soilColorSignature | Soil Profile Color Signatures |
| SoilProfileCollection | SoilProfileCollection Class |
| SoilProfileCollection-class | SoilProfileCollection Class |
| soil_minerals | Munsell Colors of Common Soil Minerals |
| sp1 | Soil Profile Data Example 1 |
| sp2 | Honcut Creek Soil Profile Data |
| sp3 | Soil Profile Data Example 3 |
| sp4 | Soil Chemical Data from Serpentinitic Soils of California |
| sp5 | Sample Soil Database #5 |
| sp6 | Soil Physical and Chemical Data from Manganiferous Soils |
| subsetProfiles | Subset SoilProfileCollection Objects. |
| subsetProfiles-method | Subset SoilProfileCollection Objects. |
| summaryTauW | Compute weighted naïve and _tau_ statistics for a cross-classification matrix |
| tauW | Compute weighted naïve and _tau_ statistics for a cross-classification matrix |
| test_hz_logic | Test Horizon Logic |
| texture.triangle.low.rv.high | Soil Texture Low-RV-High as Defined by Quantiles |
| textureTriangleSummary | Soil Texture Low-RV-High as Defined by Quantiles |
| union | Combine Multiple SoilProfileCollection Objects |
| unique | Get Indices to Unique Soil Profiles Within a Collection |
| unique-method | Get Indices to Unique Soil Profiles Within a Collection |
| uniqueSPC | Get Indices to Unique Soil Profiles Within a Collection |
| unroll | Unroll Genetic Horizons |
| xtableTauW | Compute weighted naïve and _tau_ statistics for a cross-classification matrix |
| $-method | SoilProfileCollection Class |
| $<--method | SoilProfileCollection Class |
| .lpp | Random Profile |
| [-method | SoilProfileCollection Class |