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| enveomics.R-package | Various Utilities for Microbial Genomics and Metagenomics |
| $-method | ~~ Methods for Function '$' ~~ |
| $-methods | ~~ Methods for Function '$' ~~ |
| enve.barplot | enve barplot |
| enve.cliopts | enve cliopts |
| enve.col.alpha | enve col alpha |
| enve.col2alpha | enve col2alpha |
| enve.df2dist | enve df2dist |
| enve.df2dist.group | enve df2dist group |
| enve.df2dist.list | enve df2dist list |
| enve.GrowthCurve | enve.GrowthCurve S4 class |
| enve.growthcurve | enve growthcurve |
| enve.GrowthCurve-class | enve.GrowthCurve S4 class |
| enve.prune.dist | enve prune dist |
| enve.recplot | enve recplot |
| enve.RecPlot2 | enve.RecPlot2 S4 class |
| enve.recplot2 | enve recplot2 |
| enve.RecPlot2-class | enve.RecPlot2 S4 class |
| enve.recplot2.ANIr | enve recplot2 ANIr |
| enve.recplot2.changeCutoff | enve recplot2 changeCutoff |
| enve.recplot2.compareIdentities | enve recplot2 compareIdentities |
| enve.recplot2.coordinates | enve recplot2 coordinates |
| enve.recplot2.corePeak | enve recplot2 corePeak |
| enve.recplot2.extractWindows | enve recplot2 extractWindows |
| enve.recplot2.findPeaks | enve recplot2 findPeaks |
| enve.recplot2.findPeaks.em | enve recplot2 findPeaks em |
| enve.recplot2.findPeaks.emauto | enve recplot2 findPeaks emauto |
| enve.recplot2.findPeaks.mower | enve recplot2 findPeaks mower |
| enve.recplot2.findPeaks.__emauto_one | enve recplot2 findPeaks emauto one |
| enve.recplot2.findPeaks.__em_e | enve recplot2 findPeaks em e |
| enve.recplot2.findPeaks.__em_m | enve recplot2 findPeaks em m |
| enve.recplot2.findPeaks.__mower | enve recplot2 findPeaks mower |
| enve.recplot2.findPeaks.__mow_one | enve recplot2 findPeaks mow one |
| enve.RecPlot2.Peak | enve.RecPlot2.Peak S4 class |
| enve.RecPlot2.Peak-class | enve.RecPlot2.Peak S4 class |
| enve.recplot2.seqdepth | enve recplot2 seqdepth |
| enve.recplot2.windowDepthThreshold | enve recplot2 windowDepthThreshold |
| enve.recplot2.__counts | enve recplot2 counts |
| enve.recplot2.__peakHist | enve recplot2 peakHist |
| enve.recplot2.__whichClosestPeak | enve recplot2 whichClosestPeak |
| enve.TRIBS | enve.TRIBS S4 class |
| enve.tribs | enve tribs |
| enve.TRIBS-class | enve.TRIBS S4 class |
| enve.TRIBS.merge | enve TRIBS merge |
| enve.tribs.test | enve tribs test |
| enve.TRIBStest | enve.TRIBStest S4 class |
| enve.TRIBStest-class | enve.TRIBStest S4 class |
| enve.truncate | enve truncate |
| enve.__prune.iter | enve prune iter |
| enve.__prune.reduce | enve prune reduce |
| enve.__tribs | enve tribs |
| enveomics.R | Various Utilities for Microbial Genomics and Metagenomics |
| growth.curves | Bacterial growth curves for three Escherichia coli mutants |
| phyla.counts | Counts of microbial phyla in four sites |
| plot.enve.GrowthCurve | plot enve GrowthCurve |
| plot.enve.RecPlot2 | plot enve RecPlot2 |
| plot.enve.TRIBS | plot enve TRIBS |
| plot.enve.TRIBStest | plot enve TRIBStest |
| summary.enve.GrowthCurve | summary enve GrowthCurve |
| summary.enve.TRIBS | summary enve TRIBS |
| summary.enve.TRIBStest | summary enve TRIBStest |