Evidential Analysis of Genetic Association Data

Documentation for package ‘evian’ version 2.0.0

adjustModel	Genotype coding adjusement
calculateLinearMLE	Profile likelihood calculation for quantitative outcome data using linear regression models
calculateLogitMLE	Profile likelihood calculation for binary outcome data using logistic regression models
densityPlot	Plot profile likelihood density for a single SNP.
eviandata_binary	Example dataset with a binary outcome.
eviandata_linear	Example dataset with a quantative outcome.
evianmap_binary	Example map data for eviandata_binary.
evianmap_linear	Example map data for eviandata_linear.
evian_linear	Evidential analysis for quantitative outcome data using linear regression models
evian_logit	Evidential analysis for binary outcome data using logistic regression models
expandBound	A recursive function that expands the grid search for MLE.
getGridBound	Obtain the range of the grid where MLE will be searched at
multiLine_plot	Plot methods for multiple likelihood intervals in a genomic region.
robust_forCluster	Robust adjustment function
subsetData	interior subsetting function