| rehh-package | Searching for footprints of selection using "Extended Haplotype Homozygosity" based statistics |
| bifurcation.diagram | plot of an haplotype bifurcation diagram |
| calc_ehh | EHH and iHH computations at a given core SNP |
| calc_ehhs | EHHS and iES computations at a given core SNP |
| data2haplohh | Converting data into an object of class haplohh |
| distribplot | Distribution of standardized iHS, Rsb or XP-EHH values |
| haplohh-class | Class '"haplohh"' |
| haplohh_cgu_bta12 | Example of an 'haplohh' object |
| ies2rsb | Compute Rsb (standardized ratio of iES between two populations) |
| ies2xpehh | Compute XP-EHH (standardized ratio of iES from two populations) as described in Sabeti et al. (2007) |
| ihh2ihs | Compute iHS (standardized iHH) |
| ihsplot | Plot iHS over a genome |
| make.example.files | Creating example input files |
| rehh | Searching for footprints of selection using "Extended Haplotype Homozygosity" based statistics |
| rsbplot | Plot Rsb over a genome |
| scan_hh | Computing EHH based statistics over a whole chromosome |
| xpehhplot | Plot XP-EHH over a genome |