Variance Stabilizing Transformations for Single Cell UMI Data

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Documentation for package ‘sctransform’ version 0.1.0

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denoise Denoise data by setting all latent factors to their median values and reversing the regression model
get_deviance_residuals Return deviance residuals of regularized models
is_outlier Identify outliers
pbmc Peripheral Blood Mononuclear Cells (PBMCs)
robust_scale Robust scale using median and mad
robust_scale_binned Robust scale using median and mad per bin
vst Variance stabilizing transformation for UMI count data