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| analyzedata | Returns a matrix of event counts or raw medians, as specified by inputs. Columns correspond to fcs files and rows to markers in cell types |
| asinnorm | Computes the arcsinh ratio of a matrix in relation to the specified column |
| calcperevent | Calculates percentages of of cell types of interest out of total cell population |
| CytobankAPIstatsGUI | Exports processed events and signaling data |
| filterfiles | Filters a list of fcs files by search terms |
| get1status | Filters matrix based on single sample name condition |
| get2status | Filters matrix columns based on two conditions per file, e.g. patient status, stimluation, time points, etc. |
| getfcsfiles | Gets fcs ID numbers and sample names from a given experiment |
| getmarkers | Gets appropriate marker IDs for channels of interest |
| getnewind | Rearranges signaling results matrix with rows in the desired order as outputs |
| getpops | Gets appropriate gate set IDs for populations of interest |
| getrawsignals | Computes the untransformed medians for cellular markers in populations of interest |
| parseevents | Modifies the list obtained from a call to statistics.events to a matrix with rows corresponding to fcs files and columns corresponding to the population types |
| parsestats | Takes the results of a call to statistics.general and returns a matrix of raw medians with columns corresponding to fcs files and rows to molecules of interest in different cell types |
| parsestatsmean | Takes the results of a call to statistics.general and returns a matrix of raw means with columns corresponding to fcs files and rows to molecules of interest in different cell types |
| percentevent | Calculates the percentage of cell populations given an experiment |