| .BootCA | Partial bootstrap CA |
| .DateModel | Date Model |
| .DiversityIndex | Diversity Index |
| .EvennessIndex | Diversity Index |
| .HeterogeneityIndex | Diversity Index |
| .PermutationOrder | Permutation order |
| .RichnessIndex | Diversity Index |
| access | Get or Set Parts of an Object |
| Bertin | Bar Plot |
| BootCA-class | Partial bootstrap CA |
| boves | Boves ceramics |
| compiegne | Compiègne ceramics |
| date | Date Archaeological Assemblages |
| DateModel-class | Date Model |
| date_event | Date Archaeological Assemblages |
| date_event-method | Date Archaeological Assemblages |
| date_mcd | Date Archaeological Assemblages |
| date_mcd-method | Date Archaeological Assemblages |
| DiversityIndex | Diversity Index |
| DiversityIndex-class | Diversity Index |
| EvennessIndex | Diversity Index |
| EvennessIndex-class | Diversity Index |
| Ford | Bar Plot |
| get | Get or Set Parts of an Object |
| get_id | Get or Set Parts of an Object |
| get_id-method | Get or Set Parts of an Object |
| get_order | Matrix Seriation |
| get_order-method | Matrix Seriation |
| heterogeneity-index | Heterogeneity and Evenness |
| HeterogeneityIndex | Diversity Index |
| HeterogeneityIndex-class | Diversity Index |
| index_composition | Richness and Rarefaction |
| index_composition-method | Richness and Rarefaction |
| index_evenness | Heterogeneity and Evenness |
| index_evenness-method | Heterogeneity and Evenness |
| index_heterogeneity | Heterogeneity and Evenness |
| index_heterogeneity-method | Heterogeneity and Evenness |
| index_richness | Richness and Rarefaction |
| index_richness-method | Richness and Rarefaction |
| matrigraphe | Heatmap |
| merzbach | Merzbach ceramics |
| mississippi | Mississippi ceramics |
| PermutationOrder-class | Permutation order |
| permute | Matrix Seriation |
| permute-method | Matrix Seriation |
| plot_bar | Bar Plot |
| plot_bertin | Bar Plot |
| plot_bertin-method | Bar Plot |
| plot_date | Date and Time Plot |
| plot_date-method | Date and Time Plot |
| plot_diversity | Diversity Plot |
| plot_diversity-method | Diversity Plot |
| plot_ford | Bar Plot |
| plot_ford-method | Bar Plot |
| plot_heatmap | Heatmap |
| plot_heatmap-method | Heatmap |
| plot_line | Line Plot |
| plot_matrix | Heatmap |
| plot_rank | Line Plot |
| plot_rank-method | Line Plot |
| plot_spot | Spot Plot |
| plot_spot-method | Spot Plot |
| plot_time | Date and Time Plot |
| plot_time-method | Date and Time Plot |
| rarefaction | Richness and Rarefaction |
| rarefaction-method | Richness and Rarefaction |
| refine_dates | Date Archaeological Assemblages |
| refine_dates-method | Date Archaeological Assemblages |
| refine_seriation | Matrix Seriation |
| refine_seriation-method | Matrix Seriation |
| richness-index | Richness and Rarefaction |
| RichnessIndex | Diversity Index |
| RichnessIndex-class | Diversity Index |
| seriate_correspondence | Matrix Seriation |
| seriate_correspondence-method | Matrix Seriation |
| seriate_rank-method | Matrix Seriation |
| seriate_reciprocal | Matrix Seriation |
| seriate_reciprocal-method | Matrix Seriation |
| seriation | Matrix Seriation |
| seriographe | Bar Plot |
| set | Get or Set Parts of an Object |
| similarity | Similarity |
| similarity-method | Similarity |
| subset | Extract or Replace Parts of an Object |
| test | Tests on Abundance Data |
| test_diversity | Tests on Abundance Data |
| test_diversity-method | Tests on Abundance Data |
| test_fit | Tests on Abundance Data |
| test_fit-method | Tests on Abundance Data |
| turnover | Turnover |
| turnover-index | Turnover |
| turnover-method | Turnover |
| zuni | Zuni ceramics |
| [-method | Extract or Replace Parts of an Object |
| [[-method | Extract or Replace Parts of an Object |