| analyseNetwork | Analyze the network (graph) |
| beatAML | beatAML |
| drugComb | drugComb |
| el2IncMatrix | Convert Edge list to Incidence Matrix |
| extractSubMatrix | Extract the percentage-cut-off non-missing sub-matrices in a given matrix. |
| findCluster | Find clusters in one-partite graph |
| herbIngredient | herbIngredient |
| imputeMissingValue | Impute the missing value in the given matrix. |
| NIMAA | NIMAA: A package for Nominal Data Mining Analysis. |
| plotBipartite | Plot the graph based on input data |
| plotBipartiteInteractive | Use the incidence matrix to plot an interactive bipartite graph figure |
| plotCluster | Plot the clusters in one projection of the bipartite graph. |
| plotInput | Plot the given data with heatmap figure. |
| robertson | robertson |
| scoreCluster | Score the clusters in one projection of the bipartite graph. |
| validateCluster | Validate the accuracy of our clustering of the projection comparing to users' input. |
| validateImputation | Validate different imputation methods' result comparing to user's input. |
| visualClusterInBipartite | Plot the bipartite graph with color coding for different cluster in different projections. |