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| BEST.kendall | BLAST type search for similar co-expressions with controlled FDR and MAS using Kendall correlation statistic |
| BEST.pearson | BLAST type search for similar co-expressions with controlled FDR and MAS using Pearson correlation statistic |
| cor.confint | Asymptotic confidence intervals of Pearson correlation coefficient |
| cor.rep | Estimating gene expression correlation from replicated microarray data |
| cor.rep.bootci | Bootstrap Confidence Interval for multivariate correlation estimator from replicated gene microarray data |
| cor.rep.pv | Multivariate correlation estimator from replicated gene microarray data |
| corfdrci | Two-stage screening procedure for screening gene pairs based on Pearson correlation statistic |
| corfdrci.inv | Inverse screening procedure based on Pearson correlation coefficient |
| dat | Part of galactose metabolism data. Ideker et al. Science, 292:929-934 |
| getBM | Generate Pajek compatible matrix from screened gene pairs |
| kendall.confint | Asymptotic confidence intervals of Pearson correlation coefficient |
| kendallfdrci | Two-stage screening procedure based on Kendall correlation coefficient |
| ncclust | Network constrained clustering |
| pcor.confint | Asymptotic confidence intervals of partial correlation coefficient |
| pcorfdrci | Two-stage screening procedure based on partial correlation coefficient in Graphic Gaussian Model framework |
| pcorfdrci.inv | Inverse screening procedure based on Kendall correlation coefficient |
| sm.name | Extract gene names from data matrix |
| tdclust | Traditional clustering |