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| collapseChain | Collapse several parallel chains ('RJaCGH' objects) |
| collapseChain.RJaCGH.array | Collapse several parallel chains ('RJaCGH' objects) |
| collapseChain.RJaCGH.Chrom | Collapse several parallel chains ('RJaCGH' objects) |
| collapseChain.RJaCGH.genome | Collapse several parallel chains ('RJaCGH' objects) |
| gelman.brooks.plot | gelman-brooks plot for 'RJaCGH' objects |
| gm00143 | Public CGH data of Snijders |
| gm01524 | Public CGH data of Snijders |
| gm01535 | Public CGH data of Snijders |
| gm01750 | Public CGH data of Snijders |
| gm02948 | Public CGH data of Snijders |
| gm03134 | Public CGH data of Snijders |
| gm03563 | Public CGH data of Snijders |
| gm03576 | Public CGH data of Snijders |
| gm04435 | Public CGH data of Snijders |
| gm05296 | Public CGH data of Snijders |
| gm07081 | Public CGH data of Snijders |
| gm07408 | Public CGH data of Snijders |
| gm10315 | Public CGH data of Snijders |
| gm13031 | Public CGH data of Snijders |
| gm13330 | Public CGH data of Snijders |
| model.averaging | Method for model averaging for RJaCGH objects. |
| model.averaging.RJaCGH.array | Method for model averaging for RJaCGH objects. |
| model.averaging.RJaCGH.Chrom | Method for model averaging for RJaCGH objects. |
| model.averaging.RJaCGH.genome | Method for model averaging for RJaCGH objects. |
| normal.HMM.likelihood.NH.C | Likelihood for non-homogeneous hidden Markov model |
| plot.Q.NH | Plot transition probabilities |
| plot.RJaCGH | 'plot' method for RJaCGH objects |
| Q.NH | Transition Matrix for non-homogeneous Hidden Markov Model |
| RJaCGH | Reversible Jump MCMC for the analysis of arrays of CGH |
| simulateRJaCGH | Simulate observations form a hidden Markov model with non-homogeneous transition probabilities. |
| snijders | Public CGH data of Snijders |
| states | 'states' method for RJaCGH objects |
| states.RJaCGH.array | 'states' method for RJaCGH objects |
| states.RJaCGH.Chrom | 'states' method for RJaCGH objects |
| states.RJaCGH.genome | 'states' method for RJaCGH objects |
| summary.RJaCGH | Summarizing RJaCGH models |
| trace.plot | Trace plot for 'RJaCGH' object |