| caTools-package {caTools} | R Documentation |
Contains several basic utility functions including: moving (rolling, running) window statistic functions, read/write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder/decoder, round-off error free sum and cumsum, etc.
| Package: | caTools |
| Version: | 1.6 |
| Date: | Apr 11 2006 |
| Depends: | R (>= 2.2.0), bitops |
| Suggests: | MASS, rpart |
| License: | The caMassClass Software License, Version 1.0 (See COPYING file or http://ncicb.nci.nih.gov/download/camassclasslicense.jsp) |
| URL: | http://ncicb.nci.nih.gov/download/index.jsp |
| Built: | R 2.2.1; i386-pc-mingw32; 2006-04-14 10:45:20; windows |
Index:
LogitBoost LogitBoost Classification Algorithm predict.LogitBoost Prediction Based on LogitBoost Algorithm base64encode Convert R vectors to/from the Base64 format colAUC Column-wise Area Under ROC Curve (AUC) combs All Combinations of k Elements from Vector v read.ENVI Read and Write Binary Data in ENVI Format read.gif Read and Write Images in GIF format runmean Moving Window Analysis of a Vector sample.split Split Data into Test and Train Set sum.exact Basic Sum Operations without Round-off Errors trapz Trapezoid Rule Numerical Integration
Jarek Tuszynski <jaroslaw.w.tuszynski@saic.com>
# GIF image read & write
write.gif( volcano, "volcano.gif", col=terrain.colors, flip=TRUE,
scale="always", comment="Maunga Whau Volcano")
y = read.gif("volcano.gif", verbose=TRUE, flip=TRUE)
image(y$image, col=y$col, main=y$comment, asp=1)
# test runmin, runmax and runmed
k=25; n=200;
x = rnorm(n,sd=30) + abs(seq(n)-n/4)
col = c("black", "red", "green", "brown", "blue", "magenta", "cyan")
plot(x, col=col[1], main = "Moving Window Analysis Functions (window size=25)")
lines(runmin (x,k), col=col[2])
lines(runmed (x,k), col=col[3])
lines(runmean(x,k), col=col[4])
lines(runmax (x,k), col=col[5])
legend(0,.9*n, c("data", "runmin", "runmed", "runmean", "runmax"), col=col, lty=1 )
# sum vs. sum.exact
x = c(1, 1e20, 1e40, -1e40, -1e20, -1)
a = sum(x); print(a)
b = sum.exact(x); print(b)