Analogue methods for palaeoecology

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Documentation for package `analogue' version 0.3-3

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analogue-package Analogue methods for palaeoecology
analog Analogue matching
analogue Analogue methods for palaeoecology
bayesF Bayes factors
bootstrap Bootstrap estimation and errors
cma Close modern analogues
dissim Extract dissimilarity coefficients from models
dissimilarities Extract dissimilarity coefficients from models
distance Flexibly calculate dissimilarity or distance measures
fitted.mat Fitted values of a MAT model
join Merge species data sets on common columns (species)
k Extract and set the number of analogues
mat Modern Analogue Technique transfer function models
mcarlo Monte Carlo simulation of dissimilarities
minDC Functions to extract and plot minimum dissimilarities
minDC.predict.mat Functions to extract and plot minimum dissimilarities
plot.bayesF Bayes factor plots
plot.cma Draws stripcharts of close modern analogue results
plot.dissimilarities Plots the distribution of extracted dissimilarities
plot.mat Plot diagnostics for a mat object
plot.mcarlo Plotting of Monte Carlo simulated dissimilarity distributions
plot.minDC ~~function to do ... ~~
plot.roc Plot ROC curves and associated diagnostics
predict.mat Predict method for Modern Analogue Technique models
print.analog Analogue matching
print.bayesF Bayes factors
print.bootstrap Bootstrap estimation and errors
print.cma Close modern analogues
print.fitted.mat Fitted values of a MAT model
print.mat Modern Analogue Technique transfer function models
print.mcarlo Monte Carlo simulation of dissimilarities
print.minDC Functions to extract and plot minimum dissimilarities
print.predict.mat Predict method for Modern Analogue Technique models
print.residuals.bootstrap Extract Bootstrapped Model Residuals
print.residuals.mat Extract Model Residuals
print.roc ROC curve analysis
print.summary.analog Summarising analogue matching results
print.summary.bootstrap Summarising bootstrap resampling for MAT models
print.summary.cma Summarising the extraction of close modern analogues
print.summary.mat Summarising Modern Analogue Technique models
print.summary.predict.mat Summarising MAT model predictions
reconPlot Stratigraphic plots of palaeoenvironmental reconstructions
reconPlot.predict.mat Stratigraphic plots of palaeoenvironmental reconstructions
resid.bootstrap Extract Bootstrapped Model Residuals
resid.mat Extract Model Residuals
residuals.bootstrap Extract Bootstrapped Model Residuals
residuals.mat Extract Model Residuals
rlgh Round Loch of Glenhead Diatoms
RMSEP Root mean square error of prediction
roc ROC curve analysis
Screeplot Screeplots of model results
summary.analog Summarising analogue matching results
summary.bootstrap Summarising bootstrap resampling for MAT models
summary.cma Summarising the extraction of close modern analogues
summary.mat Summarising Modern Analogue Technique models
summary.predict.mat Summarising MAT model predictions
swapdiat SWAP sub-fossil diatom and pH training set
swappH SWAP sub-fossil diatom and pH training set