Bayesian Time-Strat. Population Analysis

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Documentation for package ‘BTSPAS’ version 2014.0901

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BTSPAS-package Bayesian Time-Stratified Population Analysis
BTSPAS Bayesian Time-Stratified Population Analysis
BTSPAS-internal Internal functions not normally called by the user
expit Logit and anti-logit function.
genInitsTTln Internal functions not normally called by the user
genInitsTTnp Internal functions not normally called by the user
genInitVals Internal functions not normally called by the user
genInitValsChain Internal functions not normally called by the user
lnTheta Internal functions not normally called by the user
logit Logit and anti-logit function.
make.muTT.prior Internal functions not normally called by the user
plot_logitP Internal functions not normally called by the user
PredictivePosterior.TSPDE Internal functions not normally called by the user
PredictivePosterior.TSPDE.WHCH Internal functions not normally called by the user
PredictivePosterior.TSPDE.WHCH2 Internal functions not normally called by the user
PredictivePosterior.TSPDE.WHSteel Internal functions not normally called by the user
PredictivePosterior.TSPNDE Internal functions not normally called by the user
PredictivePosterior.TSPNDENP Internal functions not normally called by the user
PredictivePosteriorPlot.TSPDE Internal functions not normally called by the user
PredictivePosteriorPlot.TSPDE.WHCH Internal functions not normally called by the user
PredictivePosteriorPlot.TSPDE.WHCH2 Internal functions not normally called by the user
PredictivePosteriorPlot.TSPDE.WHSteel Internal functions not normally called by the user
PredictivePosteriorPlot.TSPNDE Internal functions not normally called by the user
run.jags Internal functions not normally called by the user
run.MCMC Internal functions not normally called by the user
run.openbugs Internal functions not normally called by the user
RunTime Internal functions not normally called by the user
SimplePetersen Internal functions not normally called by the user
simTSPNDE Internal functions not normally called by the user
TestIfPool Internal functions not normally called by the user
TimeStratPetersenDiagError Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with Diagonal Entries function.
TimeStratPetersenDiagErrorWHChinook Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with Diagonal Entries and separating Wild from Hatchery Chinook function.
TimeStratPetersenDiagErrorWHChinook2 Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with Diagonal Entries and separating Wild from Hatchery Chinook function.
TimeStratPetersenDiagErrorWHChinook2_fit Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with Diagonal Entries and separating Wild from Hatchery Chinook function.
TimeStratPetersenDiagErrorWHChinook_fit Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with Diagonal Entries and separating Wild from Hatchery Chinook function.
TimeStratPetersenDiagErrorWHSteel Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with Diagonal Entries and separating Wild from Hatchery Steelhead function.
TimeStratPetersenDiagErrorWHSteel_fit Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with Diagonal Entries and separating Wild from Hatchery Steelhead function.
TimeStratPetersenDiagError_fit Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with Diagonal Entries function.
TimeStratPetersenNonDiagError Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with NON Diagonal Entries function.
TimeStratPetersenNonDiagErrorNP Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with NON Diagonal Entries function.
TimeStratPetersenNonDiagErrorNPMarkAvail Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with NON Diagonal Entries function.
TimeStratPetersenNonDiagErrorNPMarkAvail_fit Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with NON Diagonal Entries function.
TimeStratPetersenNonDiagErrorNP_fit Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with NON Diagonal Entries function.
TimeStratPetersenNonDiagError_fit Wrapper (*_fit) and function to call the Time Statified Petersen Estimator with NON Diagonal Entries function.
TimeToTargetRunSize Computes and plots posterior distribution of time to get target run size. For example, the time to reach a cumulative run of 10,000 fish.
trace_plot Creates trace plots of specified parameters showing the multiple chains and the value of Rhat
visualize.muTT.prior Internal functions not normally called by the user
zzz Internal functions not normally called by the user