Bayesian analysis of haplotype association using Markov Chain Monte Carlo

[Up] [Top]

Documentation for package ‘BayHap’ version 1.0.1

Help Pages

BayHap-package Bayesian analysis of haplotype association using MCMC
autocorr Autocorrelation Function
BayHap Bayesian analysis of haplotype association using MCMC
bayhapFreq Estimation of haplotype frequencies
bayhapReg Bayesian analysis of haplotype association using Markov Chain Monte Carlo
BIC Bayesian Information Criterion
conv.test Heidelberger and Welch Convergence Diagnostics
correl Correlation Matrix
haplo.prior Prior values for model parameters
plotACF Plot autocorrelation function
plotDensity Plot Density Functions
plotFreq Plot acf, running mean, density functions and trace histories
plotReg Plot acf, running mean, density functions and trace histories
plotRmean Plot Running Mean of the Parameter Estimation
plotTrace Plot Trace Histories
print.freq Estimation of haplotype frequencies
print.reg Bayesian analysis of haplotype association using Markov Chain Monte Carlo
setupData Check and prepares original data to be analyzed