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| CINOEDV-package | Co-Information based N-Order Epistasis Detector and Visualizer |
| BatCINOEDV | Batch mode for using CINOEDV |
| CheckVerticeType | Test Vertice Type |
| CINOEDV | Co-Information based N-Order Epistasis Detector and Visualizer |
| CINOEDV_Main | Co-Information based N-Order Epistasis Detector and Visualizer |
| class | Class labels of samples |
| CoInformation | Co-Information Computation |
| CombinationEntropy | Combination Entropy Computation |
| ConstructCompleteGraph | Construct complete graph |
| DegreeAnalysis | Degree analysis of real vertices |
| Edges | Edges of constructed graphs |
| EvaluationMeasure | Evaluation Measure |
| ExhaustiveSearch | Exhaustive Search |
| FiveEffect | Interaction Effects of five-SNP combinations |
| FourEffect | Interaction Effects of four-SNP combinations |
| HeatMapFactor | Heatmap function |
| InputData | Input data |
| InstallPackage | Install CINOEDV used packages |
| NetworkData | Collect vertices and edges for network construction |
| NormalizationEffect | Normalization Effect |
| NotationName | Notation of real SNP Name |
| PlotTopEffects | Plot top n effects with their corresponding SNPs or SNP-combinations |
| PSOSearch | PSO Search |
| pts | SNP data |
| SingleEffect | Main Effects of SNPs |
| SubgraphSplit | Split subgraphs |
| TestMaxOrder | Test the parameter MaxOrder |
| TestNumberThreshold | Test the parameter NumberThreshold |
| TestPSOParameters | Check the PSO parameters |
| TestRatioThreshold | Test the parameter RatioThreshold |
| TestSNPNameFile | Test the parameter TestSNPNameFile |
| ThreeEffect | Interaction Effects of three-SNP combinations |
| tic | Start stopwatch timer |
| toc | Read elasped time from stopwatch |
| TwoEffect | Interaction Effects of two-SNP combinations |
| Vertices | Vertices of constructed graphs |