| anova.CNVassoc | Association analysis between a CNV and phenotype |
| cnv | CNV object |
| CNVassoc | Association analysis between a CNV and phenotype |
| cnvBatches | CNV object |
| cnvDefault | CNV object |
| CNVtest | Testing association between a CNV and phenotype |
| fastCNVassoc | Fast association analysis between a CNV or imputed SNPs and phenotype for case-control and cohort GWA studies. |
| fastCNVinter | Fast epistasis (pairwise interaction) analysis between two CNV or imputed SNPs for case-control and cohort GWA studies. |
| getProbs | Get posterior probabilities from an object of class 'cnv' or 'CGHcall' |
| getProbs.cghCall | Get posterior probabilities from an object of class 'cnv' or 'CGHcall' |
| getProbs.cnv | Get posterior probabilities from an object of class 'cnv' or 'CGHcall' |
| getProbsRegions | Get posterior probabilities for blocks/regions |
| getPvalBH | Corrected p values using Benjamini & Hochberg approach |
| getQualityScore | Computes a quality score for a CNV fit |
| getQualityScore.cnv | Computes a quality score for a CNV fit |
| getQualityScore.default | Computes a quality score for a CNV fit |
| is.cnv | CNV object |
| logLik.CNVassoc | Association analysis between a CNV and phenotype |
| multiCNVassoc | Association between several CNVs and disease |
| plot.cnv | CNV object |
| plotSignal | plots the intensities of a CNV univariate signal data |
| print.anova.CNVassoc | Association analysis between a CNV and phenotype |
| print.cnv | CNV object |
| print.CNVassoc | Association analysis between a CNV and phenotype |
| print.CNVtest | Testing association between a CNV and phenotype |
| print.QualityScore | Computes a quality score for a CNV fit |
| print.summary.CNVassoc | Association analysis between a CNV and phenotype |
| simCNVdataBinary | Simulation of CNV and discrete traits |
| simCNVdataCaseCon | Simulation of CNV in a case-control study design |
| simCNVdataNorm | Simulation of CNV and quantitative traits |
| simCNVdataPois | Simulate Poisson data |
| simCNVdataWeibull | Simulate of CNV and a right censored Weibull distributed trait |
| summary.CNVassoc | Association analysis between a CNV and phenotype |