Bayesian nonparametric modeling in R

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Documentation for package ‘DPpackage’ version 1.1-6

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B C D F G H I L N O P R S T U

-- B --

BDPdensity Semiparametric Bayesian density estimation using Bernstein Polynomials
BDPdensity.default Semiparametric Bayesian density estimation using Bernstein Polynomials
bir British Institute of Radiology Fractionation Studies

-- C --

calgb Cancer and Leukemia Group B (CALGB) Data
calgb.pred Cancer and Leukemia Group B (CALGB) Data for Prediction
CSDPbinary Bayesian analysis for a semiparametric logistic regression model
CSDPbinary.default Bayesian analysis for a semiparametric logistic regression model

-- D --

deterioration Time to Cosmetic Deterioration of Breast Cancer Patients
DPbetabinom Bayesian Semiparametric Beta-Binomial Model using a DP prior
DPbetabinom.default Bayesian Semiparametric Beta-Binomial Model using a DP prior
DPbinary Bayesian analysis for a semiparametric Bernoulli regression model
DPbinary.default Bayesian analysis for a semiparametric Bernoulli regression model
DPcaterpillar Caterpillar Plots for Random Effects
DPcdensity Bayesian Semiparametric Conditional Density Estimation using a DPM of normals
DPcdensity.default Bayesian Semiparametric Conditional Density Estimation using a DPM of normals
DPdensity Semiparametric Bayesian density estimation using a DPM of normals
DPdensity.default Semiparametric Bayesian density estimation using a DPM of normals
DPelicit Performs a prior elicitation for the precision parameter of a DP prior
DPelicit.default Performs a prior elicitation for the precision parameter of a DP prior
DPglmm Bayesian analysis for a semiparametric generalized linear mixed model using a MDP
DPglmm.default Bayesian analysis for a semiparametric generalized linear mixed model using a MDP
DPlmm Bayesian analysis for a semiparametric linear mixed model using a MDP
DPlmm.default Bayesian analysis for a semiparametric linear mixed model using a MDP
DPMdencens Bayesian density estimation for interval-censored data using a DPM of normals
DPMdencens.default Bayesian density estimation for interval-censored data using a DPM of normals
DPmeta Bayesian analysis for a semiparametric linear mixed effects meta-analysis model using a MDP
DPmeta.default Bayesian analysis for a semiparametric linear mixed effects meta-analysis model using a MDP
DPMglmm Bayesian analysis for a semiparametric generalized linear mixed model using a DPM of normals
DPMglmm.default Bayesian analysis for a semiparametric generalized linear mixed model using a DPM of normals
DPMlmm Bayesian analysis for a semiparametric linear mixed model using a DPM of normals
DPMlmm.default Bayesian analysis for a semiparametric linear mixed model using a DPM of normals
DPMmeta Bayesian analysis for a semiparametric linear mixed effects meta-analysis model using a DPM of normals
DPMmeta.default Bayesian analysis for a semiparametric linear mixed effects meta-analysis model using a DPM of normals
DPMolmm Bayesian analysis for a semiparametric ordinal linear mixed model using a DPM of normals
DPMolmm.default Bayesian analysis for a semiparametric ordinal linear mixed model using a DPM of normals
DPMrandom Extracts Random Effects
DPMrandom.default Extracts Random Effects
DPMrasch Bayesian analysis for a semiparametric Rasch model
DPMrasch.default Bayesian analysis for a semiparametric Rasch model
DPMraschpoisson Bayesian analysis for a semiparametric Rasch Poisson model
DPMraschpoisson.default Bayesian analysis for a semiparametric Rasch Poisson model
DPmultmeta Bayesian analysis for a semiparametric random effects multivariate meta-analysis model using a MDP
DPmultmeta.default Bayesian analysis for a semiparametric random effects multivariate meta-analysis model using a MDP
DPolmm Bayesian analysis for a semiparametric ordinal linear mixed model using a MDP
DPolmm.default Bayesian analysis for a semiparametric ordinal linear mixed model using a MDP
DPpsBF Computes Pseudo Bayes Factors from DPpackage output
DPrandom Extracts Random Effects
DPrandom.default Extracts Random Effects
DPrasch Bayesian analysis for a semiparametric Rasch model
DPrasch.default Bayesian analysis for a semiparametric Rasch model
DPraschpoisson Bayesian analysis for a semiparametric Rasch Poisson model
DPraschpoisson.default Bayesian analysis for a semiparametric Rasch Poisson model
DProc Semiparametric Bayesian ROC curve analysis using DPM of normals
DProc.default Semiparametric Bayesian ROC curve analysis using DPM of normals
DPsurvint Bayesian analysis for a semiparametric AFT regression model
DPsurvint.default Bayesian analysis for a semiparametric AFT regression model

-- F --

fleabeetles Flea-beetles
FPTbinary Bayesian analysis for a Finite Polya Tree Bernoulli regression model
FPTbinary.default Bayesian analysis for a Finite Polya Tree Bernoulli regression model
FPTrasch Bayesian analysis for a Finite Polya Tree Rasch model
FPTrasch.default Bayesian analysis for a Finite Polya Tree Rasch model
FPTraschpoisson Bayesian analysis for a Finite Polya Tree Rasch Poisson model
FPTraschpoisson.default Bayesian analysis for a Finite Polya Tree Rasch Poisson model
fractionation British Institute of Radiology Fractionation Studies

-- G --

galaxy Galaxy velocities

-- H --

HDPMcdensity Bayesian analysis for a hierarchical Dirichlet Process mixture of normals model for conditional density estimation
HDPMcdensity.default Bayesian analysis for a hierarchical Dirichlet Process mixture of normals model for conditional density estimation
HDPMdensity Bayesian analysis for a hierarchical Dirichlet Process mixture of normals model for marginal density estimation
HDPMdensity.default Bayesian analysis for a hierarchical Dirichlet Process mixture of normals model for marginal density estimation
hiv HIV-AIDS data

-- I --

igg Immunoglobulin G concentrations
indon Indonesian Children's Health Study

-- L --

LDBDPdensity Bounded Density Regression using Dependent Bernstein Polynomials
LDBDPdensity.default Bounded Density Regression using Dependent Bernstein Polynomials
LDDPdensity Bayesian analysis for a Linear Dependent Dirichlet Process Mixture Model
LDDPdensity.default Bayesian analysis for a Linear Dependent Dirichlet Process Mixture Model
LDDPrasch Bayesian analysis for a dependent semiparametric Rasch model
LDDPrasch.default Bayesian analysis for a dependent semiparametric Rasch model
LDDPraschpoisson Bayesian analysis for a dependent semiparametric Rasch Poisson model
LDDPraschpoisson.default Bayesian analysis for a dependent semiparametric Rasch Poisson model
LDDProc Linear dependent DP model for conditional ROC curve estimation.
LDDProc.default Linear dependent DP model for conditional ROC curve estimation.
LDDPsurvival Bayesian analysis for a Linear Dependent Dirichlet Process Mixture of Survival Models
LDDPsurvival.default Bayesian analysis for a Linear Dependent Dirichlet Process Mixture of Survival Models
LDDPtwopl Bayesian analysis for a dependent semiparametric two parameters logistic model
LDDPtwopl.default Bayesian analysis for a dependent semiparametric two parameters logistic model
LDPDdoublyint Bayesian analysis for a Linear Dependent Poisson Dirichlet Process Mixture Models for the Analysis of Doubly-Interval-Censored Data
LDPDdoublyint.default Bayesian analysis for a Linear Dependent Poisson Dirichlet Process Mixture Models for the Analysis of Doubly-Interval-Censored Data
LDTFPdensity Density Regression using Linear Dependent Tailfree Processes
LDTFPdensity.default Density Regression using Linear Dependent Tailfree Processes
LDTFPglmm Generalized linear mixed model using a linear dependent tailfree prior
LDTFPglmm.default Generalized linear mixed model using a linear dependent tailfree prior
LDTFPsurvival Survival Regression using Linear Dependent Tailfree Processes
LDTFPsurvival.default Survival Regression using Linear Dependent Tailfree Processes

-- N --

nodal Nodal Involvement Data

-- O --

orings Challenger Space Shuttle O-Ring Data

-- P --

Pbinary Bayesian analysis for a parametric Bernoulli regression model
Pbinary.default Bayesian analysis for a parametric Bernoulli regression model
Plm Bayesian analysis for a parametric linear regression model
Plm.default Bayesian analysis for a parametric linear regression model
predict.DPsurvint Computes the Survival Curve in a Bayesian analysis for a semiparametric AFT regression model
predict.HDPMcdensity Predictive Information for the Dependent Random Probability Measures.
predict.HDPMdensity Predictive Information for the Dependent Random Probability Measures.
ps Specify a smoothing spline fit in a PSgam formula
PSgam Bayesian analysis for a semiparametric generalized additive model
PSgam.default Bayesian analysis for a semiparametric generalized additive model
psychiatric Psychiatric Clinical Trial
PTdensity Nonparametric Bayesian density estimation using Mixtures of Polya Trees
PTdensity.default Nonparametric Bayesian density estimation using Mixtures of Polya Trees
PTglmm Bayesian analysis for a semiparametric generalized linear mixed model using a MMPT
PTglmm.default Bayesian analysis for a semiparametric generalized linear mixed model using a MMPT
PTlm Bayesian analysis for a semiparametric linear regression model
PTlm.default Bayesian analysis for a semiparametric linear regression model
PTlmm Bayesian analysis for a semiparametric linear mixed model using a MMPT
PTlmm.default Bayesian analysis for a semiparametric linear mixed model using a MMPT
PTmeta Bayesian analysis for a semiparametric linear mixed effects meta-analysis model using a MPT
PTmeta.default Bayesian analysis for a semiparametric linear mixed effects meta-analysis model using a MPT
PTolmm Bayesian analysis for a semiparametric ordinal linear mixed model using a MMPT
PTolmm.default Bayesian analysis for a semiparametric ordinal linear mixed model using a MMPT
PTrandom Extracts Random Effects
PTrandom.default Extracts Random Effects
PTsampler Polya Tree sampler function
PTsampler.default Polya Tree sampler function

-- R --

rats Rats
rolling Rolling Thumbtacks Data

-- S --

schoolgirls The Heights of Schoolgirls
seizures Epileptic seizures
sports The Australian Athletes Data

-- T --

TDPdensity Semiparametric Bayesian density estimation using DP Mixtures of Triangular Distributions
TDPdensity.default Semiparametric Bayesian density estimation using DP Mixtures of Triangular Distributions
toenail Toenail data

-- U --

uniond Union Membership