EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves.

Documentation for package ‘EpiEstim’ version 1.1-2

EpiEstim-package	The EpiEstim package
DiscrSI	Discretized Generation Time Distribution Assuming A Shifted Gamma Distribution
EpiEstim	The EpiEstim package
EstimateR	Estimation of the instantaneous reproduction number
Flu1918	Data on the 1918 H1N1 influenza pandemic in Baltimore
Flu2009	Data on the 2009 H1N1 influenza pandemic in a school in Pennsylvania
Measles1861	Data on the 1861 measles epidemic in Hagelloch, Germany
OverallInfectivity	Overall Infectivity Due To Previously Infected Individuals
SARS2003	Data on the 2003 SARS epidemic in Hong Kong
Smallpox1972	Data on the 1972 smallpox epidemic in Kosovo
WT	Estimation of the case reproduction number using the Wallinga and Teunis method