| EpiModel-package | Mathematical Modeling of Infectious Disease |
| as.data.frame.dcm | Extract Model Data for Deterministic Compartmental Models |
| as.data.frame.icm | Extract Model Data for Stochastic Models |
| as.data.frame.netsim | Extract Model Data for Stochastic Models |
| as.network.transmat | Converts transmat infection tree into a network object |
| as.phylo.transmat | Convert transmat infection tree into a phylo object |
| calc_eql | Calculate Equilibrium for Infection Prevalence |
| check_bip_degdist | Check Degree Distribution for Bipartite Target Statistics |
| color_tea | Creates a TEA Variable for Infection Status for 'ndtv' Animations |
| comp_plot | Plot Compartment Diagram for Epidemic Models |
| comp_plot.dcm | Plot Compartment Diagram for Epidemic Models |
| comp_plot.icm | Plot Compartment Diagram for Epidemic Models |
| comp_plot.netsim | Plot Compartment Diagram for Epidemic Models |
| control.dcm | Control Settings for Deterministic Compartmental Models |
| control.icm | Control Settings for Stochastic Individual Contact Models |
| control.net | Control Settings for Stochastic Network Models |
| dcm | Deterministic Compartmental Models |
| dissolution_coefs | Dissolution Coefficients for Stochastic Network Models |
| edgelist_censor | Table of Edge Censoring |
| EpiModel | Mathematical Modeling of Infectious Disease |
| epiweb | EpiModel Web |
| get_network | Extract networkDynamic Object from Network Epidemic Model |
| get_nwstats | Extract Network Statistics from Network Epidemic Model |
| get_sims | Extract Network Simulations |
| get_transmat | Extract Transmissions Matrix from Network Epidemic Model |
| icm | Stochastic Individual Contact Models |
| init.dcm | Initial Conditions for Deterministic Compartmental Models |
| init.icm | Initial Conditions for Stochastic Individual Contact Models |
| init.net | Initial Conditions for Stochastic Network Models |
| is.transmat | Extract Transmissions Matrix from Network Epidemic Model |
| merge.icm | Merge Data across Stochastic Individual Contact Model Simulations |
| merge.netsim | Merge Model Simulations Across netsim Objects |
| modules.icm | Modules for Stochastic Individual Contact Models |
| modules.net | Modules for Stochastic Network Models |
| netdx | Dynamic Network Model Diagnostics |
| netest | Dynamic Network Model Estimation |
| netsim | Stochastic Network Models |
| param.dcm | Epidemic Parameters for Deterministic Compartmental Models |
| param.icm | Epidemic Parameters for Stochastic Individual Contact Models |
| param.net | Epidemic Parameters for Stochastic Network Models |
| plot.dcm | Plot Data from a Deterministic Compartmental Epidemic Model |
| plot.icm | Plot Data from a Stochastic Individual Contact Epidemic Model |
| plot.netdx | Plot Dynamic Network Model Diagnostics |
| plot.netsim | Plot Data from a Stochastic Network Epidemic Model |
| plot.transmat | Plot transmat infection tree in one of several styles |
| summary.dcm | Summary Model Statistics |
| summary.icm | Summary Model Statistics |
| summary.netsim | Summary Model Statistics |
| transmat | Extract Transmissions Matrix from Network Epidemic Model |
| update_dissolution | Adjust Dissolution Component of Network Model Fit |