| GMCM-package | Fast optimization of Gaussian Mixture Copula Models |
| choose.theta | Heuristically chosen starting value of theta |
| dmvnormal | Multivariate Gaussian density and simulation |
| EMAlgorithm | EM algorithm for Gaussian mixture models |
| fit.full.GMCM | Unsupervised clustering using a general GMCM |
| fit.full.gmcm | Unsupervised clustering using a general GMCM |
| fit.meta.GMCM | Reproducibility/meta analysis using GMCMs |
| fit.meta.gmcm | Reproducibility/meta analysis using GMCMs |
| freshVsFrozen | Reproducibility between Fresh and Frozen B-cell subtypes |
| full2meta | Convert between parameter formats |
| get.IDR | Posterior class probabilities, local, and adjusted IDRs. |
| get.idr | Posterior class probabilities, local, and adjusted IDRs. |
| get.prob | Posterior class probabilities, local, and adjusted IDRs. |
| GMCM | Fast optimization of Gaussian Mixture Copula Models |
| is.theta | Check if parameters are valid |
| meta2full | Convert between parameter formats |
| rmvnormal | Multivariate Gaussian density and simulation |
| rtheta | Get random parameters for the Gaussian mixture (copula) model |
| SimulateGMCMData | Simulation from the Gaussian mixture (copula) model |
| SimulateGMMData | Simulation from the Gaussian mixture (copula) model |
| u133VsExon | Reproducibility between U133 plus 2 and Exon microarrays |
| Uhat | Fast ranking function |