| GeneReg | Construct time delay gene regulatory network |
| mut.expr.data | Time course cell cycle dataset of cyclin-mutant cells |
| plot | Plot gene regulatory network |
| plot.GeneReg | Plot gene regulatory network |
| tf.list | The candidate pool of potential regulators |
| timedelay.lm | time delay linear model |
| timedelay.lm.batch | time delay linear model batch |
| timedelay.univariate.lm | Internal function for time delay linear model |
| ts.bspline | B spline interpolation |
| wt.expr.data | Time course cell cycle dataset of wild-type cells |