Detection of structure from multilocus genetic data.

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Documentation for package ‘Geneland’ version 4.0.5

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Geneland-package Simulation and inference for subdivided populations
coordinates Example of coordinate file
EstimateFreqNA Estimate frequencies of null alleles.
FormatGenotypes Formatting file of genotype data.
Fstat Computes F statistics on a population genetics dataset given as R object
Fstat.output Computes F statistics on the output of an inference by MCMC simulation
Geneland Simulation and inference for subdivided populations
Geneland.GUI Graphical interface for package Geneland
genotypes Example of coordinate file
gl2gp Geneland to Genepop conversion
HZ Estimate parameters of the hybrid zone model by MCMC simulation
MCMC Markov Chain Monte-Carlo inference of clusters from genotpype data
nullify Simulates null alleles
PlotDrift Plot the drift factors
PlotFreq Plot the trace of allele frequencies in present time population and optionnaly print it.
PlotFreqA Plots allele frequencies in ancestral population along the MCMC run and optionally prints it
Plotnpop Plot of number of populations along the MCMC run
Plotntile Plot of number of tiles along the MCMC run
PlotTessDyn Plot tessellation along an MCMC run.
PlotTessellation Maps of posterior probability of membership
PosteriorMode Map of mode of posterior distribution of population membership
PostProcessChain Computation for maps of posterior probability of population membership
show.estimate.hz Show estimate of parameters of the hybrid zone model by MCMC simulation
show.simdata Graphical display of data simulated by simdata
simdata Simulation of georeferenced genotypes under an IBD + barrier model
simFmodel Simulation of multi-locus genetic data from the spatial F-model