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| GrammR-package | Graphical Representation and Modeling of Metagenomic Reads |
| Count2Distance | Calculating the dissimilarity matrix for metagenomic count data |
| GrammR | Graphical Representation and Modeling of Metagenomic Reads |
| GrammRGUI | GrammR GUI for graphical modeling and visualization |
| GrammRServ | Graphical Representation without a GUI |
| GraphMetagen | Graphical model construction for metagenomic data |
| KenDist | Wrapper for the C program which calculates the Kendall's tau-distance. |
| Make2DPlots | Construct plots for multidimensional scaling models. |
| Make3DPlots | Construct plots for multidimensional scaling models. |
| Make4DPlots | Construct plots for multidimensional scaling models. |
| MakePlots2D | Construct plots for multidimensional scaling models. |
| MakePlots3D | Construct plots for multidimensional scaling models. |
| MakePlots4D | Construct plots for multidimensional scaling models. |
| MatrixkNorm | Calculate l_p-norm distance between samples |
| MCError | Misclassification Error |
| metagencounts | Randomly generated Metagenomic Counts |
| OptimClusts | Optimal Cluster Calculator |
| Summarize | Display summary of the graphical model constructed. |