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| cov.biplot | The covariance biplot |
| cov.monoplot | The covariance monoplot |
| Mag.Bmat.plot | Magnitude of the Partial Least Squares Regression (PLSR) coefficients matrix |
| mod.KernelPLS_L | The Kernel algorithm for few(er) variables but large samples by Lindgren et al. (1993) |
| mod.KernelPLS_R | The Kernel algorithm for few(er) samples but large variables by Rannar et al. (1994) |
| mod.MMLR | Multivariate Multiple Linear Regression (MMLR) |
| mod.NIPALS | The Nonlinear Iterative PArtial Least Squares (NIPALS) algorithm |
| mod.PCA | Principal Component Analysis (PCA) |
| mod.PCR | Principal Component Regression (PCR) |
| mod.SIMPLS | The Statistical Inspired Modification to Partial Least Squares (SIMPLS) algorithm |
| mod.SPLS | Sparse Partial Least Squares (SPLS) algorithm |
| mod.VIP | The Variable Importance in the Projection (VIP) values |
| opt.penalty.values | Choosing a value for penalty parameters lambdaX and lambdaY for the Sparse Partial Least Squares (SPLS) and Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM) analyses |
| PCA.biplot | The Principal Component Analysis (PCA) biplot |
| PCA.biplot_no.SN | The Principal Component Analysis (PCA) biplot with the labels of the samples points excluded |
| PLS.binomial.GLM | Partial Least Squares-Generalized Linear Model (PLS-GLM) fitted for Binomial y |
| PLS.biplot | The Partial Least Squares (PLS) biplot |
| PLS.biplot.area | The Partial Least Squares (PLS) biplot with triangles for estimating the Partial Least Squares Regression (PLSR) coefficients |
| PLS.biplot_no.SN | The Partial Least Squares (PLS) biplot with no sample points names |
| PLS.biplot_no_labels | The Partial Least Squares (PLS) biplot with the labels of the samples, coefficient points and tick markers excluded |
| PLS.GLM | Partial Least Squares-Generalized Linear Model (PLS-GLM) algorithm |
| PLS.GLM.biplot | The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM) |
| PLS.GLM.biplot_bvec | A zoomed-in display of the coefficient points in the Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM) |
| PLS.GLM.biplot_no.SN | The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM) with the labels of the sample points excluded |
| PLS.GLM.biplot_no_labels | The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM), with the labels of the samples, coefficient points and tick markers excluded |
| PLS.GLM.biplot_SIMPLS | The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM) fitted using the SIMPLS algorithm |
| PLS.GLM.biplot_SIMPLS_no.SN | The Partial Least Squares (PLS) biplot for Generalized Linear Model (GLM) fitted using the SIMPLS algorithm, with the labels of the sample points excluded |
| PLS.GLM_SIMPLS | Partial Least Squares-Generalized Linear Model (PLS-GLM) fitted using the SIMPLS algorithm |
| SPLS.binomial.GLM | Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM) algorithm for Binomial y |
| SPLS.biplot | The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares (SPLS) |
| SPLS.biplot_Bmat | A zoomed-in display of the coefficient points in the Partial Least Squares (PLS) biplot for Sparse Partial Least Squares (SPLS) |
| SPLS.biplot_no_ax.labels | The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares (SPLS), with the labels of the tick markers excluded |
| SPLS.biplot_no_labels | The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares (SPLS), with the labels of the samples, coefficient points and tick markers excluded |
| SPLS.GLM | Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM) algorithm |
| SPLS.GLM.biplot | The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM) |
| SPLS.GLM.biplot_bvec | A zoomed-in display of the coefficient points in the Partial Least Squares (PLS) biplot for Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM) |
| SPLS.GLM.biplot_no.SN | The Partial Least Squares (PLS) biplot for Sparse Partial Least Squares-Generalized Linear Model (SPLS-GLM), with the labels of the sample points excluded |