Calculate Indices and Theoretical Properties of Protein Sequences

Documentation for package ‘Peptides’ version 1.1.1

aacomp	Compute the amino acid composition of a protein sequence
aindex	Compute the aliphatic index of a protein sequence
boman	Compute the Boman (Potential Protein Interaction) index
charge	Compute the theoretical net charge of a protein sequence
H	38 Hydrophobicity values for amino acids from various sources
hmoment	Compute the hydrophobic moment of a protein sequence
hydrophobicity	Compute the hydrophobicity index
instaindex	Compute the instability index of a protein sequence
Kfactors	The Ten Kidera Factors
kidera	Compute the Kidera factors
lengthpep	Compute the amino acid length of a protein sequence
membpos	Compute theoretically the class of a protein sequence
mw	Compute the molecular weight of a protein sequence
pepdata	Physicochemical properties and indices from 100 amino acid sequences
Peptides	Calculate Indices and Theoretical Properties of Protein Sequences
pI	Compute the isoelectic point (pI) of a protein sequence
pKscales	9 pKa scales for the side chain of charged amino acids from various sources
plot.xvg	Plot time series from GROMACS XVG files
read.xvg	Read XVG files from GROMACS Molecular Dynamics package