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| PopGenKit-package | Useful functions for (batch) file conversion and data resampling in microsatellite datasets |
| batchconvert | Convert all Genepop files in dir to Arlequin format |
| batchconvertjack | Convert all Genepop files in dir to Arlequin format while removing any subset of loci |
| batchjacklociArp | Remove a subset of loci from all Arlequin project files (extension .arp) in dir |
| batchjacklociArpRANDOM | Remove a random subset of loci from all Arlequin project files (extension .arp) in dir |
| batchrecodeBi | Transform all multi-allelic Arlequin datafiles in dir to bi-allelic datafiles |
| bootstrapHet | Calculate confidence intervals on observed and expected heterozygosity by bootstrapping individuals in each population |
| bootstrapHet_byloc | Calculate confidence intervals on observed and expected heterozygosity in each population by bootstrapping markers |
| combineBsim | Combines real and simulated multilocus data (from the software BottleSim) in new Genepop files (one file per simulation replicate). |
| convert | Convert a Genepop file to Arlequin format |
| convertjack | Convert a Genepop file to Arlequin format while allowing the removal of any subset of loci from the output |
| freqPCA | Create a table of allele frequencies from Arlequin file (.arp) that can be used directly for ordination analyses (e.g. Principal Component Analysis) |
| inputBottleSim | Create a BottleSim input file from a Genepop (.gen) file. |
| jacklociArp | Remove a subset of loci from a Arlequin project file (extension .arp) |
| jacklociArpRANDOM | Remove a random subset of loci from a Arlequin project file (extension .arp) |
| jackmsat | An internal function used by 'jackmsatpop'. Should not be used. |
| jackmsatpop | From a Genepop input file (.gen), it calculates allele rarefaction curves within each population for a given sampling interval. |
| outputBottleSim | Converts alleles from BottleSim simulation results to real allele sizes as found in the input file generated with the function 'inputBottleSim' |
| PICalc | Compute the polymorphism infomration content (PIC) of each locus in a Arlequin project file (.arp) |
| popgen | Compute allele frequencies, population genetic parameters, and pairwise Fst values from a Arlequin (.arp) input file |
| PopGenKit | Useful functions for (batch) file conversion and data resampling in microsatellite datasets |
| recodeBi | Transform a multi-allelic Arlequin datafile to a bi-allelic datafile |