Image Registration Using the NiftyReg Library

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Documentation for package ‘RNiftyReg’ version 2.2.0

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affine Create, test for and print affine matrices
applyTransform Apply a precomputed transformation
as.array.internalImage Internal images
as.array.niftyreg Two and three dimensional image registration
asAffine Create, test for and print affine matrices
buildAffine Build an affine matrix up from its constituent transformations
composeTransforms Compose two transformations
decomposeAffine Decompose an affine matrix into its constituent transformations
deformationField Calculate the deformation field for a transformation
dim.internalImage Internal images
dim<-.internalImage Internal images
dumpNifti Dump the contents of an internal NIfTI-1 object
forward Extract forward and reverse transformations
forward.niftyreg Extract forward and reverse transformations
halfTransform Calculate a half transformation
internalImage Internal images
invertAffine Invert an affine matrix
isAffine Create, test for and print affine matrices
isImage Test whether an object represents an image
jacobian Extract a Jacobian determinant map
ndim Number of dimensions
niftyreg Two and three dimensional image registration
niftyreg.linear Two and three dimensional linear image registration
niftyreg.nonlinear Two and three dimensional nonlinear image registration
pixdim Pixel dimensions and units
pixdim<- Pixel dimensions and units
pixunits Pixel dimensions and units
pixunits<- Pixel dimensions and units
print.affine Create, test for and print affine matrices
print.niftiHeader Dump the contents of an internal NIfTI-1 object
qform<- Obtain or replace the "xform" transforms for an image
readAffine Read an affine matrix from a file
readNifti Read a NIfTI-1 format file
reverse Extract forward and reverse transformations
reverse.niftyreg Extract forward and reverse transformations
sform<- Obtain or replace the "xform" transforms for an image
updateNifti Update an internal NIfTI-1 object using a template
voxelToWorld Transform points between voxel and "world" coordinates
worldToVoxel Transform points between voxel and "world" coordinates
writeAffine Write an affine matrix to a file
writeNifti Write a NIfTI-1 format file
xform Obtain or replace the "xform" transforms for an image