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| RbioRXN-package | RbioRXN - Get/process Rhea and MetaCyc (BioCyc, EcoCyc) biochemical reaction data |
| BioCyc.instantiate | Instantiate BioCyc generic reaction (MetaCyc, BioCyc, EcoCyc) |
| BioCyc.is.generic | Check generic reaction |
| BioCyc.massBal | Check mass balance |
| BioCyc2ChEBI | Convert BioCyc ID into ChEBI ID in reaction equation |
| BioCyc2cName | Convert BioCyc ID into ChEBI ID in reaction equation |
| BioCyc2KEGG | Convert BioCyc ID into KEGG ID in reaction equation |
| BioCyc2PubChem | Express BioCyc reaction equation with PubChem ID |
| example | RbioRXN example data |
| get.ChEBI | Get ChEBI data in BioPAX level 2 format |
| get.Rhea | Get Rhea data in BioPAX level 2 format |
| parse.ChEBI | Parse ChEBI raw data (chebi.owl in BioPAX level 2 format)) |
| parse.MetaCyc.c | parse MetaCyc compound data (compounds.dat in attribute-value format) |
| parse.MetaCyc.r | Parse MetaCyc reaction data (reactions.dat in attribute-value format) |
| parse.Rhea | Parse Rhea data (rhea.owl in BioPAX level 2 format) |
| RbioRXN | RbioRXN - Get/process Rhea and MetaCyc (BioCyc, EcoCyc) biochemical reaction data |
| Rhea.instantiate | Instantiate Rhea generic reaction |
| Rhea.is.generic | Check generic reaction |
| Rhea.massBal | Check mass balance |
| Rhea2cName | Convert ChEBI ID into compound name in reaction equation |
| Rhea2KEGG | Convert ChEBI ID into KEGG ID in reaction equation |