| SAGA-package | Software for the Analysis of Genetic Architecture SAGA |
| AICtoMW | converts AIC or AICc to model weights |
| AnalyzeCrossesMM | Multimodel Analysis of Line Cross Data |
| ban.osa | empirical datasets |
| cohortID | Display a lookup table for cohort IDs |
| dar.bho | empirical datasets |
| data | empirical datasets |
| DisplayCmatrix | Display a matrix of composite genetic effects |
| EvaluateModel | Evaluate Single Model |
| per.inf | empirical datasets |
| PH | empirical datasets |
| plot.genarch | provides a custom plot of a genarch object |
| plotObserved | provides the traditional line cross analysis plot. |
| SAGA | Software for the Analysis of Genetic Architecture SAGA |
| sin.cro | empirical datasets |
| SL | empirical datasets |
| SR | empirical datasets |
| VisModelSpace | Visualize Model Space |