| density.tm | Log-likelihood Estimation using the Time Machine |
| full.transitions | Full Transition Matrix Computation |
| mean.tm | Log-likelihood Estimation using the Time Machine |
| mu.mle | Maximum-Likelihood Estimation of the Mutation Rate |
| pdm | Example Dataset |
| pophistory | History of Population Size |
| pophistory.tm | History of Population Size |
| print.tm | Log-likelihood Estimation using the Time Machine |
| quantile.tm | Log-likelihood Estimation using the Time Machine |
| sample.pop | Sample Populations from the Wright-Fisher Model |
| stationary.dist | Compute Stationary Distribution of a Markov Chain |
| summary.tm | Log-likelihood Estimation using the Time Machine |
| time-dist | Time to Coalescent Event or Mutation |
| tm | Log-likelihood Estimation using the Time Machine |
| ttc | Time to Coalescent Event or Mutation |
| ttc.tm | Time to Coalescent Event or Mutation |
| ttm | Time to Coalescent Event or Mutation |
| ttm.tm | Time to Coalescent Event or Mutation |