Markov Random Fields for High-Throughput Genetics Data

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Documentation for package ‘XMRF’ version 1.0

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XMRF-package A R Package to Fit Markov Networks to High-throughput Genomics Data
brcadat RNA-Seq Data of BRCA Patients from TCGA
ggm.fit Fitted Gaussian Graphical Models
GMS Graphical Models Object
lambdaMax Maximum lambda
plot Plot GMS Object
plot.GMS Plot GMS Object
plotGML Plot Network in GML
plotNet Plot Network
processSeq Process Sequencing Data for Poisson-based MRFs
XMRF Markov Random Fields for Exponential Family Distributions
XMRF.Sim Generate simulated data from XMRF models