Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data

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Documentation for package ‘betaper’ version 1.1-0

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adonis.pertables Function to assess the efects of taxonomic uncertainty on permutational multivariate analysis of variance using distance matrices
Amazonia Tree abundance and soil data in Western Amazonia
cca.pertables Function to assess the efects of taxonomic uncertainty on [Partial] Constrained Correspondence Analysis
HCP Tree counts in tropical montane forest fragments
HCP.coords Tree counts in tropical montane forest fragments
mantel.pertables Function to assess the efects of taxonomic uncertainty on Mantel tests
pertables Function to incorporate the effect of taxonomic uncertainty on multivariate analyses of ecological data.
plot.adonis.pertables Function to assess the efects of taxonomic uncertainty on permutational multivariate analysis of variance using distance matrices
plot.cca.pertables Function to assess the efects of taxonomic uncertainty on [Partial] Constrained Correspondence Analysis
plot.mantel.pertables Function to assess the efects of taxonomic uncertainty on Mantel tests
plot.rda.pertables Function to assess the efects of taxonomic uncertainty on [Partial] Redundance Analysis
print.adonis.pertables Function to assess the efects of taxonomic uncertainty on permutational multivariate analysis of variance using distance matrices
print.cca.pertables Function to assess the efects of taxonomic uncertainty on [Partial] Constrained Correspondence Analysis
print.mantel.pertables Function to assess the efects of taxonomic uncertainty on Mantel tests
print.pertables Function to incorporate the effect of taxonomic uncertainty on multivariate analyses of ecological data.
print.rda.pertables Function to assess the efects of taxonomic uncertainty on [Partial] Redundance Analysis
rda.pertables Function to assess the efects of taxonomic uncertainty on [Partial] Redundance Analysis
soils Tree abundance and soil data in Western Amazonia