Bayesian Ordination and Regression AnaLysis

Documentation for package ‘boral’ version 0.9.1

boral-package	Bayesian Ordination and Regression AnaLysis (boral)
boral	Fitting boral (Bayesian Ordination and Regression AnaLysis) models
boral.default	Fitting boral (Bayesian Ordination and Regression AnaLysis) models
calc.condlogLik	Conditional log-likelihood for an boral model
calc.logLik.lv0	Log-likelihood for a boral model with no latent variables
calc.marglogLik	Marginal log-likelihood for an boral model
create.life	Simulate a Multivariate Response Matrix
ds.residuals	Dunn-Smyth Residuals for a boral model
fitted.boral	Extract Model Fitted Values for an boral object
get.dic	Extract Deviance Information Criterion for boral model
get.enviro.cor	Extract covariances and correlations due to shared environmental responses from boral models
get.hpdintervals	Highest posterior density intervals for an boral model
get.measures	Information Criteria for boral models
get.more.measures	Additional Information Criteria for boral models
get.residual.cor	Extract residual correlations from boral models
lvsplot	Plot the latent variables from an boral model
make.jagsboralmodel	Write a text file containing an boral model for use into JAGS
make.jagsboralnullmodel	Write a text file containing an boral model for use into JAGS
plot.boral	Plots of a fitted boral object
print.boral	Fitting boral (Bayesian Ordination and Regression AnaLysis) models
print.summary.boral	Summary of fitted boral object
simulate.boral	Simulate a Multivariate Response Matrix
summary.boral	Summary of fitted boral object