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| directPA-package | Direction Pathway Analysis Package |
| directEnrichPlot2d | Direction Enrichment Plot for Pathways and Kinases |
| directExplorer2d | Batch Direction Analysis in 2-dimentional space |
| directPA | Direction Analysis for Pathways and Kinases |
| geneStats | Gene Level Statistics |
| HEK | Phosphoproteomics of HEK-293E |
| Pathways.KEGG | KEGG pathway annotations |
| Pathways.reactome | Reactome pathway annotations |
| pathwayStats | Pathway Level Statistics |
| PhosphoELM.human | PhosphoELM annotations for human |
| PhosphoELM.mouse | PhosphoELM annotations for mouse |
| PhosphoSite.human | PhosphoSitePlus annotations for human |
| PhosphoSite.mouse | PhosphoSitePlus annotations for mouse |
| PM | Plasma Membrame Protoemics Data |
| rotate2d | Polar Coordinates Rotation |
| rotate3d | Spherical Coordinates Rotation |