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| evolqg-package | EvolQG |
| AlphaRep | Alpha Repetability |
| AncestralStates | Fast estimation of ML ancestral stated for multivariate continous traits |
| Autonomy | Calculate mean values for various matrix statistics |
| BootstrapR2 | R2 confidence intervals by bootstrap resampling |
| BootstrapRep | Bootstrap analysis via resampling |
| BootstrapStat | Non-Parametric population samples and statistic comparison |
| CalcICV | Calculates the ICV of a covariance matrix. |
| CalcR2 | Mean Squared Correlations |
| CalcR2CvCorrected | Corrected integration value |
| CalcR2CvCorrected.default | Corrected integration value |
| CalcR2CvCorrected.lm | Corrected integration value |
| CalcRepeatability | Parametric per trait Repeatabilities |
| CalculateMatrix | Calculate Covariance Matrix from a linear model fitted with lm() |
| ComparisonMap | Generic Comparison Map functions for creating parallel list methods Internal functions for making eficient comparisons. |
| ConditionalEvolvability | Calculate mean values for various matrix statistics |
| Constraints | Calculate mean values for various matrix statistics |
| CreateHipotMatrix | Test modularity hypothesis |
| dentus | Example multivariate data set |
| dentus.tree | Tree for dentus example species |
| DriftTest | Test drift hypothesis |
| evolqg | EvolQG |
| Evolvability | Calculate mean values for various matrix statistics |
| ExtendMatrix | Control Inverse matrix noise with Extension |
| Flexibility | Calculate mean values for various matrix statistics |
| KrzCor | Compare matrices via Krzanowski Correlation |
| KrzCor.default | Compare matrices via Krzanowski Correlation |
| KrzCor.list | Compare matrices via Krzanowski Correlation |
| KrzProjection | Compare matrices via Modified Krzanowski Correlation |
| KrzProjection.default | Compare matrices via Modified Krzanowski Correlation |
| KrzProjection.list | Compare matrices via Modified Krzanowski Correlation |
| LinearParsimony | Estimation of Linear Parcimony ancestral stated for multivariate continous traits |
| LModularity | L Modularity |
| MantelCor | Compare matrices via Mantel Correlation |
| MantelCor.default | Compare matrices via Mantel Correlation |
| MantelCor.list | Compare matrices via Mantel Correlation |
| MatrixCompare | Matrix Compare |
| MatrixCor | Compare matrices via Mantel Correlation |
| MatrixCor.default | Compare matrices via Mantel Correlation |
| MatrixCor.list | Compare matrices via Mantel Correlation |
| MatrixDistance | Matrix distance |
| MatrixDistance.default | Matrix distance |
| MatrixDistance.list | Matrix distance |
| MeanMatrixStatistics | Calculate mean values for various matrix statistics |
| MonteCarloR2 | R2 confidence intervals by parametric sampling |
| MonteCarloRep | Parametric repeatabilities with covariance or correlation matrices |
| MonteCarloStat | Parametric population samples with covariance or correlation matrices |
| MultiMahalanobis | Calculate Mahalonabis distance for many vectors |
| MultivDriftTest | Multivariate genetic drift test for 2 populations |
| Norm | Normalize and Norm |
| Normalize | Normalize and Norm |
| OverlapDist | Distribution overlap distance |
| Pc1Percent | Calculate mean values for various matrix statistics |
| PCAsimilarity | Compare matrices using PCA similarity factor |
| PCAsimilarity.default | Compare matrices using PCA similarity factor |
| PCAsimilarity.list | Compare matrices using PCA similarity factor |
| PCScoreCorrelation | PC Score Correlation Test |
| PhyloCompare | Compares sister groups |
| PhyloW | Calculates ancestral states of some statistic |
| plot.SRD | Compare matrices via Selection Response Decomposition |
| PlotRarefaction | Plot Rarefaction analysis |
| PlotTreeDriftTest | Plot results from TreeDriftTest |
| PrintMatrix | Print Matrix to file |
| PrintMatrix.default | Print Matrix to file |
| PrintMatrix.list | Print Matrix to file |
| RandCorr | Random correlation matrix |
| RandomMatrix | Random matrices for tests |
| RandomSkewers | Compare matrices via RandomSkewers |
| RandomSkewers.default | Compare matrices via RandomSkewers |
| RandomSkewers.list | Compare matrices via RandomSkewers |
| Rarefaction | Rarefaction analysis via ressampling |
| RarefactionStat | Non-Parametric rarefacted population samples and statistic comparison |
| RemoveSize | Remove Size Variation |
| Respondability | Calculate mean values for various matrix statistics |
| RiemannDist | Matrix Riemann distance |
| RSProjection | Random Skewers projection |
| SingleComparisonMap | Generic Single Comparison Map functions for creating parallel list methods Internal functions for making eficient comparisons. |
| SRD | Compare matrices via Selection Response Decomposition |
| SRD.default | Compare matrices via Selection Response Decomposition |
| SRD.list | Compare matrices via Selection Response Decomposition |
| TestModularity | Test modularity hypothesis |
| TreeDriftTest | Drift test along phylogeny |