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A B C D E F G H I L M N P R S T W
| geomorph-package | Geometric morphometric analyses for 2D/3D data |
| advanced.procD.lm | Procrustes ANOVA and pairwise tests for shape data, using complex linear models |
| arrayspecs | Convert landmark data matrix into array (p x k x n) |
| bilat.symmetry | Analysis of bilateral symmetry |
| buildtemplate | Build 3D surface template |
| compare.evol.rates | Comparing rates of shape evolution on phylogenies |
| compare.modular.partitions | Deprecated functions in geomorph |
| compare.multi.evol.rates | Comparing rates of shape evolution among traits on phylogenies |
| define.links | Define links between landmarks |
| define.modules | Define modules (landmark partitions) |
| define.sliders | Select points to "slide" along curves |
| digit.curves | Calculate semilandmarks along a curve |
| digit.fixed | Digitize 3D landmarks on mesh3d object |
| digitize2d | Digitize 2D landmarks on .jpg files |
| digitsurface | Digitize 3D fixed landmarks and surface semilandmarks |
| editTemplate | Edit 3D template |
| estimate.missing | Estimate locations of missing landmarks |
| findMeanSpec | Identify specimen closest to the mean of a set of aligned specimens |
| fixed.angle | Rotate a subset of 2D landmarks to common articulation angle |
| geomorph | Geometric morphometric analyses for 2D/3D data |
| geomorph.data.frame | Create a data frame with shape data |
| globalIntegration | Quantify global integration relative to self-similarity |
| gpagen | Generalized Procrustes analysis of points, curves, and surfaces |
| gridPar | Set up parameters for grids, points, and links in plotRefToTarget |
| hummingbirds | Landmark data from hummingbird bills (includes sliding semilandmarks on curves) |
| integration.test | Quantify morphological integration between modules |
| larvalTails | Tail-shapes of larval salamanders |
| modularity.test | Evaluate the degree of modular signal in morphometric datasets |
| morphol.disparity | Morphological disparity for one or more groups of specimens |
| morphol.integr | Deprecated functions in geomorph |
| mosquito | Landmarks on mosquito wings |
| motionpaths | Simulated motion paths |
| mshape | Estimate mean shape for a set of aligned specimens |
| nested.update | Update procD.lm objects with nested effects |
| phylo.integration | Quantify phylogenetic morphological integration between two or more sets of variables under Brownian motion |
| phylo.modularity | Evaluate the degree of phylogenetic modular signal in morphometric datasets |
| phylo.pls | Deprecated functions in geomorph |
| physignal | Assessing phylogenetic signal in morphometric data |
| plethodon | Landmark data from Plethodon salamander heads |
| plethShapeFood | Head shape and food use data from Plethodon salamanders |
| plethspecies | Average head shape and phylogenetic relationships for several Plethodon salamander species |
| plot.advanced.procD.lm | Plot Function for geomorph |
| plot.bilat.symmetry | Plot Function for geomorph |
| plot.CR | Plot Function for geomorph |
| plot.CR.phylo | Plot Function for geomorph |
| plot.evolrate | Plot Function for geomorph |
| plot.gpagen | Plot Function for geomorph |
| plot.physignal | Plot Function for geomorph |
| plot.pls | Plot Function for geomorph |
| plot.procD.allometry | Plot Function for geomorph |
| plot.procD.lm | Plot Function for geomorph |
| plot.trajectory.analysis | Plot Function for geomorph |
| plotAllometry | Deprecated functions in geomorph |
| plotAllSpecimens | Plot landmark coordinates for all specimens |
| plotGMPhyloMorphoSpace | Plot phylogenetic tree and specimens in tangent space |
| plotOutliers | Find potential outliers |
| plotRefToTarget | Plot shape differences between a reference and target specimen |
| plotspec | Plot 3D specimen, fixed landmarks and surface semilandmarks |
| plotTangentSpace | Plot specimens in tangent space |
| print.advanced.procD.lm | Print/Summary Function for geomorph |
| print.bilat.symmetry | Print/Summary Function for geomorph |
| print.CR | Print/Summary Function for geomorph |
| print.CR.phylo | Print/Summary Function for geomorph |
| print.evolrate | Print/Summary Function for geomorph |
| print.evolrate1 | Print/Summary Function for geomorph |
| print.gpagen | Print/Summary Function for geomorph |
| print.morphol.disparity | Print/Summary Function for geomorph |
| print.physignal | Print/Summary Function for geomorph |
| print.pls | Print/Summary Function for geomorph |
| print.procD.allometry | Print/Summary Function for geomorph |
| print.procD.lm | Print/Summary Function for geomorph |
| print.trajectory.analysis | Print/Summary Function for geomorph |
| procD.allometry | Procrustes ANOVA/regression, specifically for shape-size covariation (allometry) |
| procD.lm | Procrustes ANOVA/regression for shape data |
| procD.pgls | Phylogenetic ANOVA/regression for shape data |
| pupfish | Landmarks on pupfish |
| ratland | Landmark data from dataset rat |
| read.morphologika | Read landmark data from Morphologika file |
| read.ply | Read mesh data (vertices and faces) from ply files |
| readland.nts | Read landmark data matrix from nts file |
| readland.tps | Read landmark data from tps file |
| readmulti.nts | Read landmark data from multiple nts files |
| scallopPLY | 3D scan of a scallop shell from a .ply file in mesh3d format |
| scallops | Landmark data from scallop shells |
| summary.advanced.procD.lm | Print/Summary Function for geomorph |
| summary.bilat.symmetry | Print/Summary Function for geomorph |
| summary.CR | Print/Summary Function for geomorph |
| summary.CR.phylo | Print/Summary Function for geomorph |
| summary.evolrate | Print/Summary Function for geomorph |
| summary.evolrate1 | Print/Summary Function for geomorph |
| summary.gpagen | Print/Summary Function for geomorph |
| summary.morphol.disparity | Print/Summary Function for geomorph |
| summary.physignal | Print/Summary Function for geomorph |
| summary.pls | Print/Summary Function for geomorph |
| summary.procD.allometry | Print/Summary Function for geomorph |
| summary.procD.lm | Print/Summary Function for geomorph |
| summary.trajectory.analysis | Print/Summary Function for geomorph |
| trajectory.analysis | Quantify and compare shape change trajectories |
| two.b.pls | Two-block partial least squares analysis for shape data |
| two.d.array | Convert (p x k x n) data array into 2D data matrix |
| warpRefMesh | Creates a mesh3d object warped to the mean shape |
| warpRefOutline | Creates a 2D outline warped to the mean shape |
| writeland.tps | Write landmark data to tps file |