| ggRandomForests-package | ggRandomForests: Visually Exploring Random Forests |
| calc_auc | Area Under the ROC Curve calculator |
| calc_auc.gg_roc | Area Under the ROC Curve calculator |
| calc_roc | Reciever Operator Characteristic calculator |
| calc_roc.randomForest | Reciever Operator Characteristic calculator |
| calc_roc.rfsrc | Reciever Operator Characteristic calculator |
| combine.gg_partial | combine two gg_partial objects |
| combine.gg_partial_list | combine two gg_partial objects |
| gg_error | randomForestSRC error rate data object |
| gg_error.randomForest | randomForestSRC error rate data object |
| gg_error.rfsrc | randomForestSRC error rate data object |
| gg_interaction | Minimal Depth Variable Interaction data object ('find.interaction'). |
| gg_minimal_depth | Minimal depth data object ('[randomForestSRC]{var.select}') |
| gg_minimal_depth.rfsrc | Minimal depth data object ('[randomForestSRC]{var.select}') |
| gg_minimal_vimp | Minimal depth vs VIMP camparison by variable rankings. |
| gg_partial | Partial variable dependence object |
| gg_partial_coplot | Data structures for stratified partial coplots |
| gg_partial_coplot.rfsrc | Data structures for stratified partial coplots |
| gg_partial_list | Partial variable dependence object |
| gg_rfsrc | Predicted response data object |
| gg_rfsrc.rfsrc | Predicted response data object |
| gg_roc | ROC (Receiver operator curve) data from a classification random forest. |
| gg_roc.rfsrc | ROC (Receiver operator curve) data from a classification random forest. |
| gg_survival | Nonparametric survival estimates. |
| gg_variable | Marginal variable depedance data object. |
| gg_variable.rfsrc | Marginal variable depedance data object. |
| gg_vimp | Variable Importance (VIMP) data object |
| gg_vimp.rfsrc | Variable Importance (VIMP) data object |
| interaction_Boston | Cached 'find.interaction' matrix objects for examples, diagnostics and vignettes. Data sets storing 'find.interaction' matrix objects corresponding to training data according to the following naming convention: • 'interaction_iris' - from a randomForestSR[C] for the 'iris' data set. • 'interaction_Boston' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'interaction_pbc' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| interaction_data | Cached 'find.interaction' matrix objects for examples, diagnostics and vignettes. Data sets storing 'find.interaction' matrix objects corresponding to training data according to the following naming convention: • 'interaction_iris' - from a randomForestSR[C] for the 'iris' data set. • 'interaction_Boston' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'interaction_pbc' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| interaction_iris | Cached 'find.interaction' matrix objects for examples, diagnostics and vignettes. Data sets storing 'find.interaction' matrix objects corresponding to training data according to the following naming convention: • 'interaction_iris' - from a randomForestSR[C] for the 'iris' data set. • 'interaction_Boston' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'interaction_pbc' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| interaction_pbc | Cached 'find.interaction' matrix objects for examples, diagnostics and vignettes. Data sets storing 'find.interaction' matrix objects corresponding to training data according to the following naming convention: • 'interaction_iris' - from a randomForestSR[C] for the 'iris' data set. • 'interaction_Boston' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'interaction_pbc' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| kaplan | nonparametric kaplan-meier estimates |
| logit_loess | logit_loess takes |
| nelson | nonparametric Nelson-Aalen estimates |
| partial.rfsrc | randomForestSRC partial dependence (data object) (modified from randomForestSRC V1.6.0) |
| partial_Boston | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'plot.variable' objects corresponding to training data according to the following naming convention: • 'partial_iris' - from a randomForestSR[C] for the 'iris' data set. • 'partial_Boston' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'partial_pbc' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| partial_Boston_surf | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'plot.variable' objects corresponding to training data according to the following naming convention: • 'partial_Boston_surf' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'partial_pbc_surf' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) • 'partial_pbc_time' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| partial_coplot_Boston | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'rfsrc' objects corresponding to training data according to the following naming convention: • 'partial_coplot_Boston' - randomForestS[R]C for the 'Boston' housing data set ('MASS' package). |
| partial_coplot_Boston2 | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'rfsrc' objects corresponding to training data according to the following naming convention: • 'partial_coplot_Boston' - randomForestS[R]C for the 'Boston' housing data set ('MASS' package). |
| partial_coplot_data | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'rfsrc' objects corresponding to training data according to the following naming convention: • 'partial_coplot_Boston' - randomForestS[R]C for the 'Boston' housing data set ('MASS' package). |
| partial_coplot_pbc | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'rfsrc' objects corresponding to training data according to the following naming convention: • 'partial_coplot_Boston' - randomForestS[R]C for the 'Boston' housing data set ('MASS' package). |
| partial_coplot_pbc2 | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'rfsrc' objects corresponding to training data according to the following naming convention: • 'partial_coplot_Boston' - randomForestS[R]C for the 'Boston' housing data set ('MASS' package). |
| partial_data | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'plot.variable' objects corresponding to training data according to the following naming convention: • 'partial_iris' - from a randomForestSR[C] for the 'iris' data set. • 'partial_Boston' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'partial_pbc' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| partial_iris | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'plot.variable' objects corresponding to training data according to the following naming convention: • 'partial_iris' - from a randomForestSR[C] for the 'iris' data set. • 'partial_Boston' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'partial_pbc' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| partial_pbc | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'plot.variable' objects corresponding to training data according to the following naming convention: • 'partial_iris' - from a randomForestSR[C] for the 'iris' data set. • 'partial_Boston' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'partial_pbc' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| partial_pbc_surf | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'plot.variable' objects corresponding to training data according to the following naming convention: • 'partial_Boston_surf' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'partial_pbc_surf' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) • 'partial_pbc_time' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| partial_pbc_time | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'plot.variable' objects corresponding to training data according to the following naming convention: • 'partial_Boston_surf' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'partial_pbc_surf' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) • 'partial_pbc_time' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| partial_surface_data | Cached 'plot.variable' objects for examples, diagnostics and vignettes. Data sets storing 'plot.variable' objects corresponding to training data according to the following naming convention: • 'partial_Boston_surf' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'partial_pbc_surf' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) • 'partial_pbc_time' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| plot.gg_error | Plot a 'gg_error' object |
| plot.gg_interaction | plot.gg_interaction Plot a 'gg_interaction' object, |
| plot.gg_minimal_depth | Plot a 'gg_minimal_depth' object for random forest variable ranking. |
| plot.gg_minimal_vimp | Plot a 'gg_minimal_vimp' object for comparing the Minimal Depth and VIMP variable rankings. |
| plot.gg_partial | Partial variable dependence plot, operates on a 'gg_partial' object. |
| plot.gg_partial_list | Partial variable dependence plot, operates on a 'gg_partial_list' object. |
| plot.gg_rfsrc | Predicted response plot from a 'gg_rfsrc' object. |
| plot.gg_roc | ROC plot generic function for a 'gg_roc' object. |
| plot.gg_survival | Plot a 'gg_survival' object. |
| plot.gg_variable | Plot a 'gg_variable' object, |
| plot.gg_vimp | Plot a 'gg_vimp' object, extracted variable importance of a 'rfsrc' object |
| print.gg_minimal_depth | Print a 'gg_minimal_depth' object. |
| quantile_pts | Find points evenly distributed along the vectors values. |
| rfsrc_Boston | Cached 'rfsrc' objects for examples, diagnostics and vignettes. Data sets storing 'rfsrc' objects corresponding to training data according to the following naming convention: • 'rfsrc_iris' - randomForestSR[C] for the 'iris' data set. • 'rfsrc_Boston' - randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'rfsrc_pbc' - randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| rfsrc_cache_datasets | Recreate the cached data sets for the ggRandomForests package |
| rfsrc_data | Cached 'rfsrc' objects for examples, diagnostics and vignettes. Data sets storing 'rfsrc' objects corresponding to training data according to the following naming convention: • 'rfsrc_iris' - randomForestSR[C] for the 'iris' data set. • 'rfsrc_Boston' - randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'rfsrc_pbc' - randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| rfsrc_iris | Cached 'rfsrc' objects for examples, diagnostics and vignettes. Data sets storing 'rfsrc' objects corresponding to training data according to the following naming convention: • 'rfsrc_iris' - randomForestSR[C] for the 'iris' data set. • 'rfsrc_Boston' - randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'rfsrc_pbc' - randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| rfsrc_pbc | Cached 'rfsrc' objects for examples, diagnostics and vignettes. Data sets storing 'rfsrc' objects corresponding to training data according to the following naming convention: • 'rfsrc_iris' - randomForestSR[C] for the 'iris' data set. • 'rfsrc_Boston' - randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'rfsrc_pbc' - randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| rfsrc_pbc_test | Cached 'rfsrc' objects for examples, diagnostics and vignettes. Data sets storing 'rfsrc' objects corresponding to training data according to the following naming convention: • 'rfsrc_iris' - randomForestSR[C] for the 'iris' data set. • 'rfsrc_Boston' - randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'rfsrc_pbc' - randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| shift | lead function to shift by one (or more). |
| surface_matrix | Construct a set of (x, y, z) matrices for surface plotting a 'gg_partial_coplot' object |
| surface_matrix.gg_partial_coplot | Construct a set of (x, y, z) matrices for surface plotting a 'gg_partial_coplot' object |
| varsel_Boston | Cached 'var.select' objects for examples, diagnostics and vignettes. Data sets storing 'var.select' objects corresponding to training data according to the following naming convention: • 'varsel_iris' - from a randomForestSR[C] for the 'iris' data set. • 'varsel_Boston' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'varsel_pbc' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| varsel_data | Cached 'var.select' objects for examples, diagnostics and vignettes. Data sets storing 'var.select' objects corresponding to training data according to the following naming convention: • 'varsel_iris' - from a randomForestSR[C] for the 'iris' data set. • 'varsel_Boston' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'varsel_pbc' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| varsel_iris | Cached 'var.select' objects for examples, diagnostics and vignettes. Data sets storing 'var.select' objects corresponding to training data according to the following naming convention: • 'varsel_iris' - from a randomForestSR[C] for the 'iris' data set. • 'varsel_Boston' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'varsel_pbc' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |
| varsel_pbc | Cached 'var.select' objects for examples, diagnostics and vignettes. Data sets storing 'var.select' objects corresponding to training data according to the following naming convention: • 'varsel_iris' - from a randomForestSR[C] for the 'iris' data set. • 'varsel_Boston' - from a randomForestS[R]C for the 'Boston' housing data set ('MASS' package). • 'varsel_pbc' - from a randomForest[S]RC for the 'pbc' data set ('randomForestSRC' package) |