Calling Copy Number Alterations in Amplicon Sequencing Data

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Documentation for package ‘ioncopy’ version 1.0

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ioncopy-package Calling copy number alterations in amplicon sequencing data
calculate.CN Calculation of copy numbers
call.amplicons Amplicon-wise call of copy number alterations
call.genes Gene-wise calling of copy number alterations
coverage Coverage data of 154 amplicons in 184 breast carcinomas
ioncopy Calling copy number alterations in amplicon sequencing data