| kobe-package | Tools for provide scientific fisheries advice |
| assmt | Example Datasets |
| dRate | dRate |
| hinge | incr |
| iav | iav |
| incr | incr |
| kobe | ~~ Methods for Function 'kobe' in Package 'kobe' ~~ |
| kobe-method | ~~ Methods for Function 'kobe' in Package 'kobe' ~~ |
| kobe2box | Reads pro2box projection results and returns stock and harvest rate relative to MSY reference points or proxies. |
| kobeAspic | Reads ASPIC bootstraps and projections and returns stock and harvest rate relative to MSY reference points |
| kobeDens | kobeDens |
| kobeFreq | kobeFreq |
| kobeInterp | Methods to generate the Kobe II Strategy Matrix. |
| kobeInterp-method | Methods to generate the Kobe II Strategy Matrix. |
| kobeInterp-methods | Methods to generate the Kobe II Strategy Matrix. |
| kobeMFCL | Reads Multifan-CL assessment results and returns stock and harvest rate relative to MSY reference points |
| kobeP | Calculates whether each point corresponds to being over-fished or subject to over-fishing and being in the red, green or yellow regions of the kobe phase plots quadrants. |
| kobeP-methods | Calculates whether each point corresponds to being over-fished or subject to over-fishing and being in the red, green or yellow regions of the kobe phase plots quadrants. |
| kobePhase | kobePhase |
| kobePhase-method | kobePhase |
| kobePhaseMar | Kobe Phase Plot with Marginal Densities |
| kobeProb | kobeProb |
| kobeShade | Shades matrix depending on value of elements |
| kobeShade-method | Shades matrix depending on value of elements |
| kobeShade-methods | Shades matrix depending on value of elements |
| kobeSmry | Creates Summaries i.e. probability of being in the green quadrant |
| kobeSmry-method | Creates Summaries i.e. probability of being in the green quadrant |
| kobeSS | Reads SS assessment results and returns stock and harvest rate relative to MSY reference points |
| kobeSS3 | Reads SS3 results and returns stock and harvest rate relative to MSY reference points |
| kobeTrks | Creates tracks for plotting on phase plot |
| kobeTrks-method | Creates tracks for plotting on phase plot |
| multiplot | Calculates confidence intervals for different probabiity levels for pairs of data points. |
| prj | Example Datasets |
| prj1 | Example Datasets |
| recovered | recovered |
| sims | Example Datasets |
| theme_ms | ggplot2 theme |