k-Top Scoring Pairs for Microarray Classification

Documentation for package ‘ktspair’ version 1.0

ktspair-package	Computation of the k-TSP
AUC.calc	Compute the AUC
bootstrap.graphic.ktsp	Graphical display of the bootstrap procedure
bootstrap.ktsp	Bootstrap procedure for the k-TSP
cv	Crossvalidation for the parameter k
cv2	Crossvalidation with chosen pairs of genes
dat	Simulated gene expressions of individuals.
eSet	Simulated gene expressions of individuals.
grp	Group of the individuals.
kts.pair	Calculation of the k top scoring pairs.
ktspair	Computation of the k-TSP
ktspcalc	Compute the k top scoring pairs based on a gene expression matrix and a group indicator vector.
ktspcalc2	The k-TSP with chosen pairs of genes
ktspdata	Simulated dataset of gene expressions in a matrix form.
ktspplot	Graphical representation of ktsp objects
make.consecutive.int	Transform the group vector into a binary vector
ordertsp	Ordering of the pairs of genes
plot.ktsp	Graphical representation of ktsp objects
predict.ktsp	Prediction using a ktsp object
print.ktsp	Print the results of the k-TSP
rank_na	Rank the gene expression and Replace NA
ROC.graphic.ktsp	Graphical display of the ROC curve
ROC.offset	ROC curve based on the offset method for k-TSP method
ROC.voting	ROC curve based on the voting system for k-TSP method
summary.ktsp	Summary of ktsp object