| allele.report | likeLTD::allele.report |
| allele.report.peaks | likeLTD::allele.report.peaks |
| compatible.genotypes | likeLTD::compatible.genotypes |
| create.likelihood | likeLTD::create.likelihood |
| create.likelihood.log | likeLTD::create.likelihood.log |
| create.likelihood.vectors | likeLTD::create.likelihood.vectors |
| create.likelihood.vectors.peaks | likeLTD::create.likelihood.vectors.peaks |
| CSP.heights.plot | likeLTD::CSP.heights.plot |
| defence.hypothesis | likeLTD::defence.hypothesis |
| defence.hypothesis.peaks | likeLTD::defence.hypothesis.peaks |
| DEoptimLoop | likeLTD::DEoptimLoop |
| determine.dropout | determine.dropout |
| DNA17-db | NGMSelect allele database |
| evaluate | likeLTD::evaluate |
| evaluate.from.interim | likeLTD::evaluate.from.interim |
| evaluate.from.interim.peaks | likeLTD::evaluate.from.interim.peaks |
| evaluate.peaks | likeLTD::evaluate.peaks |
| get.likely.genotypes | likeLTD::get.likely.genotypes |
| get.likely.genotypes.peaks | likeLTD::get.likely.genotypes.peaks |
| Identifiler-db | Identifiler allele database |
| initial.arguments | likeLTD::initial.arguments |
| lgc-allele-freqs-wbp | Allele database |
| likeLTD | likeLTD |
| linkage | Recombination rates for linked loci |
| load.allele.database | likeLTD::load.allele.database |
| locus.likes | likeLTD::locus.likes |
| locus.likes.peaks | likeLTD::locus.likes.peaks |
| objective.function | likeLTD objective functions |
| optimisation.params | likeLTD::optimisation.params |
| optimisation.params.peaks | likeLTD::optimisation.params.peaks |
| output.report | likeLTD::output.report |
| output.report.peaks | likeLTD::output.report.peaks |
| pack.admin.input | likeLTD::pack.admin.input |
| pack.admin.input.peaks | likeLTD::pack.admin.input.peaks |
| peaks.results.plot | likeLTD::peaks.results.plot |
| penalties | likeLTD::penalties |
| plotLikelihood.2d | likeLTD::plotLikelihood.2d |
| prosecution.hypothesis | likeLTD::prosecution.hypothesis |
| prosecution.hypothesis.peaks | likeLTD::prosecution.hypothesis.peaks |
| read.csp.profile | likeLTD::read.csp.profile |
| read.known.profiles | likeLTD::read.known.profiles |
| read.peaks.profile | likeLTD::read.peaks.profile |
| read.unc.profile | likeLTD::read.unc.profile |
| relistArguments | likeLTD::relistArguments |
| relistArguments.peaks | likeLTD::relistArguments.peaks |
| SGMplus-db | SGMplus allele database |
| unitTests.likeLTD | Unit tests for the package likeLTD |