| mizer-package | mizer: Multi-species size-based modelling in R |
| getBiomass | Calculate the total biomass of each species within a size range at each time step. |
| getBiomass-method | Calculate the total biomass of each species within a size range at each time step. |
| getCommunitySlope | Calculate the slope of the community abundance |
| getCommunitySlope-method | Calculate the slope of the community abundance |
| getEGrowth | getEGrowth method for the size based model |
| getEGrowth-method | getEGrowth method for the size based model |
| getEReproAndGrowth | getEReproAndGrowth method for the size based model |
| getEReproAndGrowth-method | getEReproAndGrowth method for the size based model |
| getESpawning | getESpawning method for the size based model |
| getESpawning-method | getESpawning method for the size based model |
| getFeedingLevel | getFeedingLevel method for the size based model |
| getFeedingLevel-method | getFeedingLevel method for the size based model |
| getFMort | Get the total fishing mortality from all fishing gears by time, species and size |
| getFMort-method | Get the total fishing mortality from all fishing gears by time, species and size |
| getFMortGear | Get the fishing mortality by time, gear, species and size |
| getFMortGear-method | Get the fishing mortality by time, gear, species and size |
| getM2 | getM2 method for the size based model |
| getM2-method | getM2 method for the size based model |
| getM2Background | getM2Background method for the size based model |
| getM2Background-method | getM2Background method for the size based model |
| getMeanMaxWeight | Calculate the mean maximum weight of the community |
| getMeanMaxWeight-method | Calculate the mean maximum weight of the community |
| getMeanWeight | Calculate the mean weight of the community |
| getMeanWeight-method | Calculate the mean weight of the community |
| getN | Calculate the total abundance in terms of numbers of species within a size range |
| getN-method | Calculate the total abundance in terms of numbers of species within a size range |
| getPhiPrey | getPhiPrey method for the size based model |
| getPhiPrey-method | getPhiPrey method for the size based model |
| getPredRate | getPredRate method for the size based model |
| getPredRate-method | getPredRate method for the size based model |
| getProportionOfLargeFish | Calculate the proportion of large fish |
| getProportionOfLargeFish-method | Calculate the proportion of large fish |
| getRDD | getRDD method for the size based model |
| getRDD-method | getRDD method for the size based model |
| getRDI | getRDI method for the size based model |
| getRDI-method | getRDI method for the size based model |
| getSSB | Calculate the SSB of species |
| getSSB-method | Calculate the SSB of species |
| getYield | Calculate the total yield of each species |
| getYield-method | Calculate the total yield of each species |
| getYieldGear | Calculate the total yield per gear and species |
| getYieldGear-method | Calculate the total yield per gear and species |
| getZ | getZ method for the size based model |
| getZ-method | getZ method for the size based model |
| get_initial_n | Calculate initial population abundances for the community populations |
| inter | Sample interaction data set |
| knife_edge | Size based knife-edge selectivity function |
| mizer | mizer: Multi-species size-based modelling in R |
| mizer, | mizer: Multi-species size-based modelling in R |
| MizerParams | Constructors for objects of 'MizerParams' class |
| MizerParams-class | MizerParams |
| MizerParams-method | Constructors for objects of 'MizerParams' class |
| MizerSim | Constructor for the 'MizerSim' class |
| MizerSim-class | MizerSim |
| MizerSim-method | Constructor for the 'MizerSim' class |
| NS_species_params | Example parameters data sets |
| NS_species_params_gears | Example parameters data sets |
| plot | Summary plot for 'MizerSim' objects |
| plot-method | Summary plot for 'MizerSim' objects |
| plotBiomass | Plot the biomass of each species through time |
| plotBiomass-method | Plot the biomass of each species through time |
| plotFeedingLevel | Plot the feeding level of each species by size |
| plotFeedingLevel-method | Plot the feeding level of each species by size |
| plotFMort | Plot total fishing mortality of each species by size |
| plotFMort-method | Plot total fishing mortality of each species by size |
| plotM2 | Plot M2 of each species by size |
| plotM2-method | Plot M2 of each species by size |
| plotSpectra | Plot the abundance spectra of each species and the background population |
| plotSpectra-method | Plot the abundance spectra of each species and the background population |
| plotYield | Plot the total yield of each species through time |
| plotYield-method | Plot the total yield of each species through time |
| plotYieldGear | Plot the total yield of each species by gear through time |
| plotYieldGear-method | Plot the total yield of each species by gear through time |
| project | project method for the size based modelling |
| project-method | project method for the size based modelling |
| set_community_model | Sets up parameters for a community-type model |
| set_trait_model | Sets up parameters for a trait-based model |
| sigmoid_length | Length based sigmoid selectivity function |
| summary | Summary method |
| summary-method | Summary method |