| nLTT-package | Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves |
| ABC_SMC_nLTT | A function to perform Approximate Bayesian Computation within an Sequential Markov Chain (ABC-SMC), for diversification analysis of phylogenetic trees. |
| exampleTrees | example trees to test the functionality of the package |
| MCMC_nLTT | Code to perform Metropolis-Hastings MCMC for a diversification model, given a phylogenetic tree. This function was used in the MEE paper to calculate the likelihood reference estimates. |
| nLTT | Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves |
| nLTT.lines | Normalized version of the ape function ltt.lines. |
| nLTT.plot | Normalized version of the ape function ltt.plot |
| nLTTstat | Calculate the difference between two normalized Lineage-Through-Time curves, given two phylogenetic trees. |